Abstract
This study considers the oligomeric of TBP1 from the extreme halophilic archaeaon Haloferax volcanii. This protein is in the first step of the cascade of binding events leading to transcription initiation. Sedimentation velocity shows that at 3M KCl, the protein appears to be in several oligomeric forms.
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Schuck P (2000) Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and lamm equation modeling. Biophys J 78(3):1606–1619
Garcia de la Torre J, Huertas ML, Carrasco B (2000) Calculation of Hydrodynamic Properties of Globular Proteins from Their Atomic-Level Structure. Biophys J 78(2):719–730
Daugherty MA, Brenowitz M, Fried MG (2000) Participation of the amino-terminal domain in the self-association of the full-length yeast TATA binding protein. Biochemistry 39(16):4869–4880
Khrapunov S, Pastor N, Brenowitz M (2002) Solution structural studies of the Saccharomyces cerevisiae TATA binding protein (TBP). Biochemistry 41(30):9559–9571
Coleman RA, Pugh BF (1997) Slow dimer dissociation of the TATA binding protein dictates the kinetics of DNA binding. Proc Natl Acad Sci USA 94(14):7221–7226
Jackson-Fisher AJ et al. (1999) A role for TBP dimerization in preventing unregulated gene expression. Mol Cell 3(6):717–727
Weideman CA et al. (1997) Dynamic interplay of TFIIA, TBP and TATA DNA. J Mol Biol 271(1):61–75
Kosa PF et al. (1997) The 2.1-A crystal structure of an archaeal preinitiation complex: TATA-box-binding protein/transcription factor (II)B core/TATA-box. Proc Natl Acad Sci USA 94(12):6042–6047
Littlefield O, Korkhin Y, Sigler PB (1999) The structural basis for the oriented assembly of a TBP/TFB/promoter complex. Proc Natl Acad Sci USA 96(24):13668–13673
Zimmerman SB, Minton AP (1993) Macromolecular crowding: biochemical, biophysical, and physiological consequences. Annu Rev Biophys Biomol Struct 22:27–65
Bergqvist S et al. (2002) Reversal of halophilicity in a protein-DNA interaction by limited mutation strategy. Structure (Camb) 10(5):629–637
Bergqvist S et al. (2004) Heat capacity effects of water molecules and ions at a protein-DNA interface. J Mol Biol 336(4):829–842
Csermely P (2001) Water and cellular folding processes. Cell Mol Biol (Noisy-le-grand) 47(5):791–800
Becker M et al. (1999) The double helix is dehydrated: evidence from the hydrolysis of acridinium ester-labeled probes. Biochemistry 38(17):5603–5611
Oren A (1999) Bioenergetic aspects of halophilism. Microbiol Mol Biol Rev 63(2):334–348
Britton KL et al. (1998) Insights into the molecular basis of salt tolerance from the study of glutamate dehydrogenase from Halobacterium salinarum. J Biol Chem 273(15):9023–9030
Dennis P et al. (1997) Evolutionary divergence and salinity-mediated selection in halophilic archaea. Microbiol Mol Biol Rev 61(1):90–104
Acknowledgments
The authors would like to thank Ken Davis for invaluable assistance in running the analytical ultracentrifuge, and Tom Batstone for in-depth discussion of the transcription mechanisms in the archaea. This work was supported by The University of Nottingham, The Nuffield Foundation and the Royal Society (UK).
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Mutowo, P., Scott, D.J. Oligomerisation of TBP1 from Haloferax volcanii . In: Wandrey, C., Cölfen, H. (eds) Analytical Ultracentrifugation VIII. Progress in Colloid and Polymer Science, vol 131. Springer, Berlin, Heidelberg. https://doi.org/10.1007/2882_008
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DOI: https://doi.org/10.1007/2882_008
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