Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Abbreviations
- 2D:
-
Two-dimensional
- 3D:
-
Three-dimensional
- δ/κ:
-
K i(δ)/K i(κ)
- μ/κ:
-
K i(μ)/K i(κ)
- BCG:
-
Bicyclic guanidine
- CCK:
-
Cholecystokinin
- DOR:
-
δ-Opioid receptor
- GPCR:
-
G-protein-coupled receptor
- K i :
-
Inhibition constant
- KOR:
-
κ-Opioid receptor
- MD:
-
Molecular dynamics
- MMFF:
-
Merck molecular force field
- MOR:
-
μ-Opioid receptor
- ORL1:
-
Opioid receptor-like 1 receptor
- pK a :
-
Negative logarithm of acid dissociation constant
- QSAR:
-
Quantitative structure–activity relationship
- SAR:
-
Structure–activity relationship
References
Kieffer BL (1995) Recent advances in molecular recognition and signal transduction of active peptides: receptors for opioid peptides. Cell Mol Neurobiol 15:615–635
Dhawan BN, Cesselin F, Raghubir R, Reisine T, Bradley PB, Portoghese PS, Hamon M (1996) International Union of Pharmacology. XII. Classification of opioid receptors. Pharmacol Rev 48:567–592
Millan MJ (1990) κ-Opioid receptors and analgesia. Trends Pharmacol Sci 11:70–76
Williams M, Kowaluk EA, Arneric SP (1999) Emerging molecular approaches to pain therapy. J Med Chem 42:1481–1500
Chavkin C, Goldstein A (1981) Specific receptor for the opioid peptide dynorphin: structure–activity relationships. Proc Natl Acad Sci U S A 78:6543–6547
Dooley CT, Ny P, Bidlack JM, Houghten RA (1998) Selective ligands for the μ, δ, and κ opioid receptors identified from a single mixture based tetrapeptide positional scanning combinatorial library. J Biol Chem 273:18848–18856
Przydzial MJ, Pogozheva ID, Bosse KE, Andrews SM, Tharp TA, Traynor JR, Mosberg HI (2005) Roles of residues 3 and 4 in cyclic tetrapeptide ligand recognition by the κ-opioid receptor. J Pept Res 65:333–342
Houghten RA, Dooley CT, Appel JR (2006) In vitro and direct in vivo testing of mixture-based combinatorial libraries for the identification of highly active and specific opiate ligands. AAPS J 8:E371–E382
Corbett AD, Kosterlitz HW (1986) Bremazocine is an agonist at kappa-opioid receptors and an antagonist at mu-opioid receptors in the guinea-pig myenteric plexus. Br J Pharmacol 89:245–249
Tamura T, Ogawa J, Taniguchi T, Waki I (1990) Preferential action of eptazocine, a novel analgesic, with opioid receptors in isolated guinea pig ileum and mouse vas deferens preparations. Folia Pharmacol Japon 95:41–46
Ronsisvalle G, Pasquinucci L, Pappalardo MS, Vittorio F, Fronza G, Romagnoli C, Pistacchio E, Spampinato S, Ferri S (1993) Non-peptide ligands for opioid receptors. Design of κ-specific agonists. J Med Chem 36:1860–1865
Dortch-Carnes J, Potter DE (2005) Bremazocine: a κ-opioid agonist with potent analgesic and other pharmacologic properties. CNS Drug Rev 11:195–212
Pasquinucci L, Iadanza M, Marrazzo A, Prezzavento O, Ronsisvalle S, Scoto GM, Parenti C, De Luca L, Ronsisvalle G (2007) New benzomorphan derivatives of MPCB as MOP and KOP receptor ligands. Pharmazie 62:813–824
Kawai K, Hayakawa J, Miyamoto T, Imamura Y, Yamane S, Wakita H, Fujii H, Kawamura K, Matsuura H, Izumimoto N, Kobayashi R, Endo T, Nagase H (2008) Design, synthesis, and structure–activity relationship of novel opioid κ-agonists. Bioorg Med Chem 16:9188–9201
Nemoto T, Fujii H, Narita M, Miyoshi K, Nakamura A, Suzuki T, Nagase H (2008) Synthesis of a novel 6,14-epoxymorphinan derivative and its pharmacology. Bioorg Med Chem Lett 18:6398–6401
Nagase H, Watanabe A, Nemoto T, Yamaotsu N, Hayashida K, Nakajima M, Hasebe K, Nakao K, Mochizuki H, Hirono S, Fujii H (2010) Drug design and synthesis of a novel κ opioid receptor agonist with an oxabicyclo[2.2.2]octane skeleton and its pharmacology. Bioorg Med Chem Lett 20:121–124
Szmuszkovicz J, Von Voigtlander PF (1982) Benzeneacetamide amines: structurally novel non-mμ opioids. J Med Chem 25:1125–1126
Lahti RA, Mickelson MM, McCall JM, Von Voigtlander PF (1985) [3H]U-69593 a highly selective ligand for the opioid κ receptor. Eur J Pharmacol 109:281–284
Halfpenny PR, Horwell DC, Hughes J, Hunter JC, Rees DC (1990) Highly selective κ-opioid analgesics. 3. Synthesis and structure-activity relationships of novel N-[2-(1-pyrrolidinyl)-4- or -5-substituted cyclohexyl]arylacetamide derivatives. J Med Chem 33:286–291
Hunter JC, Leighton GE, Meecham KG, Boyle SJ, Horwell DC, Rees DC, Hughes J (1990) CI-977, a novel and selective agonist for the kappa-opioid receptor. Br J Pharmacol 101:183–189
Rajagopalan P, Scribner RM, Pennev P, Schmidt WK, Tam SW, Steinfels GF, Cook L (1992) DuP 747: a new, potent, kappa opioid analgesic. Synthesis and pharmacology1. Bioorg Med Chem Lett 2:715–720
Rajagopalan P, Scribner RM, Pennev P, Mattei PL, Kezar HS, Cheng CY, Cheeseman RS, Ganti VR, Johnson AL, Wuonola MA, Schmidt WK, Tam SW, Steinfels GF, Cook L (1992) DuP 747: sar study. Bioorg Med Chem Lett 2:721–726
Kögel B, Christoph T, Friderichs E, Hennies H-H, Matthiesen T, Schneider J, Holzgrabe U (1998) HZ2, a selective kappa-opioid agonist. CNS Drug Rev 4:54–70
Siener T, Cambareri A, Kuhl U, Englberger W, Haurand M, Kögel B, Holzgrabe U (2000) Synthesis and opioid receptor affinity of a series of 2,4-diaryl-substituted 3,7-diazabicylononanones. J Med Chem 43:3746–3751
Benyhe S, Márki Á, Nachtsheim C, Holzgrabe U, Borsodi A (2003) Kappa-receptor selective binding of opioid ligands with a heterocyclic bicyclo[3.3.1]nonan-9-one structure. Acta Biol Hung 54:147–155
Houghten RA, Pinilla C, Appel JR, Blondelle SE, Dooley CT, Eichler J, Nefzi A, Ostresh JM (1999) Mixture-based synthetic combinatorial libraries. J Med Chem 42:3743–3778
Houghten RA, Pinilla C, Giulianotti MA, Appel JR, Dooley CT, Nefzi A, Ostresh JM, Yu Y, Maggiora GM, Medina-Franco JL, Brunner D, Schneider J (2008) Strategies for the use of mixture-based synthetic combinatorial libraries: scaffold ranking, direct testing in vivo, and enhanced deconvolution by computational methods. J Comb Chem 10:3–19
Freye E, Boeck G, Schaal M, Ciaramelli F (1986) The benzodiazepine (+)-tifluadom (KC-6128), but not its optical isomer (KC-5911) induces opioid kappa receptor-related EEG power spectra and evoked potential changes. Pharmacology 33:241–248
Cappelli A, Anzini M, Vomero S, Menziani MC, De Benedetti PG, Sbacchi M, Clarke GD, Mennuni L (1996) Synthesis, biological evaluation, and quantitative receptor docking simulations of 2-[(acylamino)ethyl]-1,4-benzodiazepines as novel tifluadom-like ligands with high affinity and selectivity for κ-opioid receptors. J Med Chem 39:860–872
Azzolina O, Collina S, Linati L, Anzini M, Cappelli A, Scheideler MA, Sbacchi M (2001) Enantiomers of 2-[(acylamino)ethyl]-1,4-benzodiazepines, potent ligands of κ-opioid receptor: chiral chromatographic resolution, configurational assignment, and biological activity. Chirality 13:606–612
Anzini M, Canullo L, Braile C, Cappelli A, Gallelli A, Vomero S, Menziani MC, De Benedetti PG, Rizzo M, Collina S, Azzolina O, Sbacchi M, Ghelardini C, Galeotti N (2003) Synthesis, biological evaluation, and receptor docking simulations of 2-[(acylamino)ethyl]-1,4-benzodiazepines as κ-opioid receptor agonists endowed with antinociceptive and antiamnesic activity. J Med Chem 46:3853–3864
Roth BL, Baner K, Westkaemper R, Siebert D, Rice KC, Steinberg S, Ernsberger P, Rothman RB (2002) Salvinorin A: a potent naturally occurring nonnitrogenous κ opioid selective agonist. Proc Natl Acad Sci U S A 99:11934–11939
Yan F, Mosier PD, Westkaemper RB, Stewart J, Zjawiony JK, Vortherms TA, Sheffler DJ, Roth BL (2005) Identification of the molecular mechanisms by which the diterpenoid salvinorin A binds to κ-opioid receptors. Biochemistry 44:8643–8651
Kane BE, Nieto MJ, McCurdy CR, Ferguson DM (2006) A unique binding epitope for salvinorin A, a non-nitrogenous kappa opioid receptor agonist. FEBS J 273:1966–1974
Kane BE, McCurdy CR, Ferguson DM (2008) Toward a structure-based model of salvinorin A recognition of the κ-opioid receptor. J Med Chem 51:1824–1830
Lavecchia A, Greco G, Novellino E, Vittorio F, Ronsisvalle G (2000) Modeling of κ-opioid receptor/agonists interactions using pharmacophore-based and docking simulations. J Med Chem 43:2124–2134
Filizola M, Villar HO, Loew GH (2001) Molecular determinants of non-specific recognition of δ, μ, and κ opioid receptors. Bioorg Med Chem 9:69–76
Filizola M, Villar HO, Loew GH (2001) Differentiation of δ, μ, and κ opioid receptor agonists based on pharmacophore development and computed physicochemical properties. J Comput Aided Mol Des 15:297–307
Subramanian G, Paterlini MG, Larson DL, Portoghese PS, Ferguson DM (1998) Conformational analysis and automated receptor docking of selective arylacetamide-based κ-opioid agonists. J Med Chem 41:4777–4789
Holzgrabe U, Brandt W (2003) Mechanism of action of the diazabicyclononanone-type κ-agonists. J Med Chem 46:1383–1389
Pogozheva ID, Przydzial MJ, Mosberg HI (2005) Homology modeling of opioid receptor-ligand complexes using experimental constraints. AAPS J 07:E434–E448
Kane BE, Svensson B, Ferguson DM (2006) Molecular recognition of opioid receptor ligands. AAPS J 8:E126–E137
Kolb P, Ferreira RS, Irwin JJ, Shoichet BK (2009) Docking and chemoinformatic screens for new ligands and targets. Curr Opin Biotechnol 20:429–436
Michino M, Brooks CL III (2009) Predicting structurally conserved contacts for homologous proteins using sequence conservation filters. Proteins 77:448–453
Michino M, Abola E, GPCR Dock 2008 participants, Brooks CL III, Dixon JS, Moult J, Stevens RC (2009) Community-wide assessment of GPCR structure modelling and ligand docking: GPCR Dock 2008. Nat Rev Drug Discov 8:455–463
de Graaf C, Rognan D (2009) Customizing G protein-coupled receptor models for structure-based virtual screening. Curr Pharm Des 15:4026–4048
Katritch V, Rueda M, Lam PC-H, Yeager M, Abagyan R (2010) GPCR 3D homology models for ligand screening: lessons learned from blind predictions of adenosine A2a receptor complex. Proteins 78:197–211
Raynor K, Kong H, Chen Y, Yasuda K, Yu L, Bell GI, Reisine T (1994) Pharmacological characterization of the cloned κ-, δ-, and μ-opioid receptors. Mol Pharmacol 45:330–334
Lapalu S, Moisand C, Mazarguil H, Cambois G, Mollereau C, Meunier J-C (1997) Comparison of the structure-activity relationships of nociceptin and dynorphin A using chimeric peptides. FEBS Lett 417:333–336
Emmerson PJ, Liu MR, Woods JH, Medzihradsky F (1994) Binding affinity and selectivity of opioids at mu, delta and kappa receptors in monkey brain membranes. J Pharmacol Exp Ther 271:1630–1637
Gear RW, Miaskowski C, Gordon NC, Paul SM, Heller PH, Levine JD (1999) The kappa opioid nalbuphine produces gender- and dose-dependent analgesia and antianalgesia in patients with postoperative pain. Pain 83:339–345
Giardina G, Clarke GD, Dondio G, Petrone G, Sbacchi M, Vecchietti V (1994) Selective κ-opioid agonists: synthesis and structure-activity relationships of piperidines incorporating an oxo-containing acyl group. J Med Chem 37:3482–3491
Wang Y, Tang K, Inan S, Siebert D, Holzgrabe U, Lee DYW, Huang P, Li J-G, Cowan A, Liu-Chen L-Y (2005) Comparison of pharmacological activities of three distinct κ ligands (Salvinorin A, TRK-820 and 3FLB) on κ opioid receptors in vitro and their antipruritic and antinociceptive activities in vivo. J Pharmacol Exp Ther 312:220–230
Ostresh JM, Schoner CC, Hamashin VT, Nefzi A, Meyer J-P, Houghten RA (1998) Solid-phase synthesis of trisubstituted bicyclic guanidines via cyclization of reduced n-acylated dipeptides. J Org Chem 63:8622–8623
Harding WW, Tidgewell K, Byrd N, Cobb H, Dersch CM, Butelman ER, Rothman RB, Prisinzano TE (2005) Neoclerodane diterpenes as a novel scaffold for μ opioid receptor ligands. J Med Chem 48:4765–4771
Prisinzano TE, Tidgewell K, Harding WW (2005) κ Opioids as potential treatments for stimulant dependence. AAPS J 07:E592–E599
Tidgewell K, Groer CE, Harding WW, Lozama A, Schmidt M, Marquam A, Hiemstra J, Partilla JS, Dersch CM, Rothman RB, Bohn LM, Prisinzano TE (2008) Herkinorin analogues with differential β-arrestin-2 interactions. J Med Chem 51:2421–2431
Lin C-E, Takemori AE, Portoghese PS (1993) Synthesis and κ-opioid antagonist selectivity of a norbinaltorphimine congener. Identification of the address moiety required for κ-antagonist activity. J Med Chem 36:2412–2415
Jones RM, Hjorth SA, Schwartz TW, Portoghese PS (1998) Mutational evidence for a common κ antagonist binding pocket in the wild-type κ and mutant μ[K303E] opioid receptors. J Med Chem 41:4911–4914
Metzger TG, Paterlini MG, Ferguson DM, Portoghese PS (2001) Investigation of the selectivity of oxymorphone- and naltrexone-derived ligands via site-directed mutagenesis of opioid receptors: exploring the ‘address’ recognition locus. J Med Chem 44:857–862
Martin WR (1983) Pharmacology of opioids. Pharmacol Rev 35:283–323
Feinberg AP, Creese I, Snyder SH (1976) The opiate receptor: a model explaining structure-activity relationships of opiate agonists and antagonists. Proc Natl Acad Sci USA 73:4215–4219
Portoghese PS (1965) A new concept on the mode of interaction of narcotic analgesics with receptors. J Med Chem 8:609–616
Portoghese PS, Alreja BD, Larson DL (1981) Allylprodine analogs as receptor probes. Evidence that phenolic and nonphenolic ligands interact with different subsites on identical opioid receptors. J Med Chem 24:782–787
Gozalbes R, Barbosa F, Nicolaï E, Horvath D, Froloff N (2009) Development and validation of a pharmacophore-based QSAR model for the prediction of CNS activity. ChemMedChem 4:204–209
Medina-Franco JL, Martnez-Mayorga K, Bender A, Marn RM, Giulianotti MA, Pinilla C, Houghten RA (2009) Characterization of activity landscapes using 2D and 3D similarity methods: consensus activity cliffs. J Chem Inf Model 49:477–491
Yamaotsu N, Fujii H, Nagase H, Hirono S (2010) Identification of the three-dimensional pharmacophore of κ-opioid receptor agonists. Bioorg Med Chem 18:4446–4452
Fujii H, Narita M, Mizoguchi H, Murachi M, Tanaka T, Kawai K, Tseng LF, Nagase H (2004) Drug design and synthesis of ε opioid receptor agonist: 17-(cyclopropylmethyl)-4,5α-epoxy-3,6β-dihydroxy-6,14-endoethenomorphinan-7α-(N-methyl-N-phenethyl)carboxamide (TAN-821) inducing antinociception mediated by putative ε opioid receptor. Bioorg Med Chem 12:4133–4145
Kuhl U, von Korff M, Baumann K, Burschka C, Holzgrabe U (2001) Stereochemical behaviour of κ-agonistic 2,4-dipyridin-2-yl-3,7-diazabicyclo[3.3.1]nonanones—influence of the substituent in position N3. J Chem Soc Perkin Trans 2:2037–2042
Tsujishita H, Hirono S (1997) Camdas: an automated conformational analysis system using molecular dynamics. J Comput Aided Mol Des 11:305–315
Halgren TA (1999) MMFF VI. MMFF94s option for energy minimization studies. J Comput Chem 20:720–729
Halgren TA (1999) MMFF VII. Characterization of MMFF94, MMFF94s, and other widely available force fields for conformational energies and for intermolecular-interaction energies and geometries. J Comput Chem 20:730–748
Iwase K, Hirono S (1999) Estimation of active conformations of drugs by a new molecular superposing procedure. J Comput Aided Mol Des 13:499–512
Nagase H, Osa Y, Nemoto T, Fujii H, Imai M, Nakamura T, Kanemasa T, Kato A, Gouda H, Hirono S (2009) Design and synthesis of novel delta opioid receptor agonists and their pharmacologies. Bioorg Med Chem Lett 19:2792–2795
Acknowledgments
We reused some content from [67] with permission from Elsevier. Copyright (2010).
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2010 Springer-Verlag Berlin Heidelberg
About this chapter
Cite this chapter
Yamaotsu, N., Hirono, S. (2010). 3D-Pharmacophore Identification for κ-Opioid Agonists Using Ligand-Based Drug-Design Techniques. In: Nagase, H. (eds) Chemistry of Opioids. Topics in Current Chemistry, vol 299. Springer, Berlin, Heidelberg. https://doi.org/10.1007/128_2010_84
Download citation
DOI: https://doi.org/10.1007/128_2010_84
Published:
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-642-18106-1
Online ISBN: 978-3-642-18107-8
eBook Packages: Chemistry and Materials ScienceChemistry and Material Science (R0)