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Informative MicroRNA Expression Patterns for Cancer Classification

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Data Mining for Biomedical Applications (BioDM 2006)

Part of the book series: Lecture Notes in Computer Science ((LNBI,volume 3916))

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Abstract

Some non-coding small RNAs, known as microRNAs (miRNAs), have been shown to play important roles in gene regulation and various biological processes. The abnormal expression of some specific miRNA genes often results in the development of cancer. In this paper, we find discriminatory miRNA patterns for cancer classification from miRNA expression profiles. The experimental results show that the expression patterns from a small set of miRNAs are very accurate in prediction. Further, the experimental results also suggest that the expression patterns of these informative miRNAs are conserved in different vertebrates during the evolution process.

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References

  1. Ambros, V.: The functions of animal microRNAs. Nature 431, 350–355 (2004)

    Article  Google Scholar 

  2. Bartel, D.P.: MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell. 116, 281–297 (2004)

    Article  Google Scholar 

  3. Alvarez-Garcia, I., Miska, E.A.: MicroRNA functions in animal development and human disease. Development 132, 4653–4662 (2005)

    Article  Google Scholar 

  4. Gregory, R.I., Shiekhattar, R.: MicroRNA Biogenesis and Cancer. Cancer Res. 65(9), 3509–3512 (2005)

    Article  Google Scholar 

  5. He, L., Thomson, J., Hemann, M., Hernando-Monge, E., Mu, D., Goodson, S., Powers, S., Cordon-Cardo, C., Lowe, S., Hannon, G., Hammond, S.: A MicroRNA polycistron as a potential human oncogene. Nature 435, 828–833 (2005)

    Article  Google Scholar 

  6. Lu, J., Getz, G., Miska, E.A., Alvarez-Saavedra, E., Lamb, J., Peck, D., Sweet-Cordero, A., Ebert, B.L., Mak, R.H., Ferrando, A.A., Downing, J.R., Jacks, T., Horvitz, H.R., Golub, T.R.: MicroRNA expression profiles classify human cancers. Nature 435, 834–838 (2005)

    Article  Google Scholar 

  7. Aha, D., Kibler, D., Albert, M.: Instance-based learning algorithms. Machine Learning 6, 37–66 (1991)

    Google Scholar 

  8. Specht, D.F.: Probabilistic neural networks. Neural Networks 3, 109–118 (1990)

    Article  Google Scholar 

  9. Zheng, Y., Kwoh, C.K.: Identifying simple discriminatory gene vectors with an information theory approach. In: Proceedings of the 4th Computational Systems Bioinformatics Conference, CSB 2005, pp. 12–23. IEEE Computer Society Press, Los Alamitos (2005)

    Google Scholar 

  10. Langley, P., Iba, W., Thompson, K.: An analysis of bayesian classifiers. In: National Conference on Artificial Intelligence, pp. 223–228 (1992)

    Google Scholar 

  11. Shannon, C., Weaver, W.: The Mathematical Theory of Communication. University of Illinois Press, Urbana (1963)

    MATH  Google Scholar 

  12. McEliece, R.: The Theory of Information and Coding: A Mathematical Framework for Communication. Encyclopedia of Mathematics and Its Applications, vol. 3. Addison-Wesley Publishing Company, Reading (1977)

    MATH  Google Scholar 

  13. Cover, T., Thomas, J.: Elements of Information Theory. John Wiley & Sons, Inc., Chichester (1991)

    Book  MATH  Google Scholar 

  14. Cherkassky, V., Mulier, F.: Learning from Data: Concepts, Theory, and Methods. John Wiley & Sons, Inc., New York (1998)

    MATH  Google Scholar 

  15. Fayyad, U., Irani, K.: Multi-interval discretization of continuous-valued attributes for classification learning. In: Proceedings of the 13th International Joint Conference on Artificial Intelligence, IJCAI 1993, Chambery, France, pp. 1022–1027 (1993)

    Google Scholar 

  16. Frank, E., Hall, M., Trigg, L., Holmes, G., Witten, I.: Data mining in bioinformatics using Weka. Bioinformatics 20(15), 2479–2481 (2004)

    Article  Google Scholar 

  17. Quinlan, J.: C4.5: Programs for machine learning. Morgan Kaufmann, San Francisco (1993)

    Google Scholar 

  18. Platt, J.: Fast training of support vector machines using sequential minimal optimization. In: Advances in kernel methods: support vector learning, pp. 185–208. MIT Press, Cambridge (1999)

    Google Scholar 

  19. Cohen, W.W.: Fast effective rule induction. In: Proc. 12th International Conference on Machine Learning, pp. 115–123. Morgan Kaufmann, San Francisco (1995)

    Google Scholar 

  20. Meltzer, P.S.: Cancer genomics: Small RNAs with big impacts. Nature 435, 745–746 (2005)

    Article  Google Scholar 

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© 2006 Springer-Verlag Berlin Heidelberg

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Zheng, Y., Kwoh, C.K. (2006). Informative MicroRNA Expression Patterns for Cancer Classification. In: Li, J., Yang, Q., Tan, AH. (eds) Data Mining for Biomedical Applications. BioDM 2006. Lecture Notes in Computer Science(), vol 3916. Springer, Berlin, Heidelberg. https://doi.org/10.1007/11691730_15

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  • DOI: https://doi.org/10.1007/11691730_15

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-33104-9

  • Online ISBN: 978-3-540-33105-6

  • eBook Packages: Computer ScienceComputer Science (R0)

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