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Structural and Functional Relationships in Prokaryotes

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References

  1. Neuhard, J. and P. Nygaard. 1987. Purines and pyrimidines. In Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology (F.C. Neidhardt, J.L. Ingraham, B. Magasanik, K.B. Low, M. Schaechter, and H.E. Umbarger, eds.). American Society for Microbiology Press, Washington, D.C., pp. 445–473.

    Google Scholar 

  2. Stanier, R.Y., J.L. Ingraham, M.L. Wheelis, and R.R. Painter. 1986. The Microbial World, 5th edit. Prentice-Hall, Englewood Cliffs, N.J.

    Google Scholar 

  3. Pittard, A.J. 1996. Biosynthesis of the aromatic amino acids. In Escherichia coli and Salmonella: Cellular and Molecular Biology (F.C. Neidhardt, R. Curtiss III, J.L. Ingraham, E.C.C. Lin, K.B. Low, B. Magasanik, W.S. Reznikoff, M. Riley, M. Schaechter, and H.E. Umbarger, eds.). American Society for Microbiology Press, Washington, D.C., pp. 458–484.

    Google Scholar 

  4. Greene, R.C. 1996. Biosynthesis of methionine. In Escherichia coli and Salmonella: Cellular and Molecular Biology (F.C. Neidhardt, R. Curtiss III, J.L. Ingraham, E.C.C. Lin, K. B. Low, B. Magasanik, W.S. Reznikoff, M. Riley, M. Schaechter, and H.E. Umbarger, eds.). American Society for Microbiology Press, Washington, D.C., pp. 542–560.

    Google Scholar 

  5. Patte, J.-C. 1996. Biosynthesis of threonine and lysine. In Escherichia coli and Salmonella: Cellular and Molecular Biology (F.C. Neidhardt, R. Curtiss III, J.L. Ingraham, E.C.C. Lin, K.B. Low, B. Magasanik, W.S. Reznikoff, M. Riley, M. Schaechter, and H.E. Umbarger, eds.). American Society for Microbiology Press, Washington, D.C., pp. 528–541.

    Google Scholar 

  6. Glansdorff, N. 1996. Biosynthesis of arginine and polyamines. In Escherichia coli and Salmonella: Cellular and Molecular Biology (F.C. Neidhardt, R. Curtiss III, J.L. Ingraham, E.C.C. Lin, K.B. Low, B. Magasanik, W.S. Reznikoff, M. Riley, M. Schaechter, and H.E. Umbarger, eds.). American Society for Microbiology Press, Washington, D.C., pp. 408–433.

    Google Scholar 

  7. Leisinger, T. 1996. Biosynthesis of proline. In Escherichia coli and Salmonella: Cellular and Molecular Biology (F.C. Neidhardt, R. Curtiss III, J.L. Ingraham, E.C.C. Lin, K.B. Low, B. Magasanik, W.S. Reznikoff, M. Riley, M. Schaechter, and H.E. Umbarger, eds.). American Society for Microbiology Press, Washington, D.C., pp. 434–441.

    Google Scholar 

  8. Reitzer, L.J. 1996. Ammonia assimilation and the biosynthesis of glutamine, glutamate, aspartate, asparagine, L-alanine, and D-alanine. In Escherichia coli and Salmonella: Cellular and Molecular Biology (F.C. Neidhardt, R. Curtiss III, J.L. Ingraham, E.C.C. Lin, K.B. Low, B. Magasanik, W.S. Reznikoff, M. Riley, M. Schaechter, and H.E. Umbarger, eds.). American Society for Microbiology Press, Washington, D.C., pp. 391–407.

    Google Scholar 

  9. Stauffer, G.V. 1996. Biosynthesis of serine, glycine and one-carbon units. In Escherichia coli and Salmonella: Cellular and Molecular Biology (F.C. Neidhardt, R. Curtiss III, J.L. Ingraham, E.C.C. Lin, K.B. Low, B. Magasanik, W.S. Reznikoff, M. Riley, M. Schaechter, and H.E. Umbarger, eds.). American Society for Microbiology Press, Washington, D.C., pp. 506–513.

    Google Scholar 

  10. Umbarger, H.E. 1996. Biosynthesis of the branched-chain amino acids. In Escherichia coli and Salmonella: Cellular and Molecular Biology (F.C. Neidhardt, R. Curtiss III, J.L. Ingraham, E.C.C. Lin, K.B. Low, B. Magasanik, W.S. Reznikoff, M. Riley, M. Schaechter, and H.E. Umbarger, eds.). American Society for Microbiology Press, Washington, D.C., pp. 442–457.

    Google Scholar 

  11. Winkler, M.E. 1996. Biosynthesis of histidine. In Escherichia coli and Salmonella: Cellular and Molecular Biology (F.C. Neidhardt, R. Curtiss III, J.L. Ingraham, E.C.C. Lin, K.B. Low, B. Magasanik, W.S. Reznikoff, M. Riley, M. Schaechter, and H.E. Umbarger, eds.). American Society for Microbiology Press, Washington, D.C., pp. 485–505.

    Google Scholar 

  12. Karlsoson, M. and M. Sahlin. 1997. Microbial ribonucleotide reductases—essential and diverse. In Transition Metals in Microbial Metabolism (G. Winkelmann and C.J. Carrano, eds.). Harwood Academic, Amsterdam, pp. 435–470.

    Google Scholar 

  13. Linn, S. 1966. The DNAses, topoisomerases, and helicases of Escherichia coli. In Escherichia coli and Salmonella: Cellular and Molecular Biology (F.C. Neidhardt, R. Curtiss III, J.L. Ingraham, E.C.C. Lin, K.B. Low, B. Magasanik, W.S. Reznikoff, M. Riley, M. Schaechter, and H.E. Umbarger, eds.). American Society for Microbiology Press, Washington, D.C., pp. 764–772.

    Google Scholar 

  14. Marians, K.J. 1996. Replication fork propagation. In Escherichia coli and Salmonella: Cellular and Molecular Biology (F.C. Neidhardt, R. Curtiss III, J.L. Ingraham, E.C.C. Lin, K.B. Low, B. Magasanik, W.S. Reznikoff, M. Riley, M. Schaechter, and H.E. Umbarger, eds.). American Society for Microbiology Press, Washington, D.C., pp. 749–763.

    Google Scholar 

  15. Björk, G.R. 1987. Stable RNA modification. In Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology (F.C. Neidhardt, J.L. Ingraham, B. Magasanik, K.B. Low, M. Schaechter, and H.E. Umbarger, eds.). American Society for Microbiology Press, Washington, D.C., pp. 861–886.

    Google Scholar 

  16. Green, C.J. and B.S. Vold. 1993. tRNA, tRNA processing, and aminoacyl-tRNA synthesases. In Bacillus subtilis and Other Gram-Positive Bacteria (A.L. Sonenshein, J.A. Hoch, and R. Losick, eds.). American Society for Microbiology Press, Washington, D.C., pp. 683–698.

    Google Scholar 

  17. King, T.C. and D. Schlessinger. 1987. Processing of RNA transcripts. In Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology (F.C. Neidhardt, J.L. Ingraham, B. Magasanik, K.B. Low, M. Schaechter, and H.E. Umbarger, eds.). American Society for Microbiology Press, Washington, D.C., pp. 703–718.

    Google Scholar 

  18. Russell, P.J. 1996. Genetics, 4th edit. HarperCollins, New York.

    Google Scholar 

  19. Richardson, J.P. and J. Greenblatt. 1996. Control of RNA chain elongation and termination. In Escherichia coli and Salmonella: Cellular and Molecular Biology (F.C. Neidhardt, R. Curtiss III, J.L. Ingraham, E.C.C. Lin, K.B. Low, B. Magasanik, W.S. Reznikoff, M. Riley, M. Schaechter, and H.E. Umbarger, eds.). American Society for Microbiology Press, Washington, D.C., pp. 822–848.

    Google Scholar 

  20. Lonetto, M.A. and C.A. Gross. 1996. Nomenclature of sigma factors from Escherichia coli and Salmonella typhimurium and relationships to sigma factors from other organisms. In Escherichia coli and Salmonella: Cellular and Molecular Biology (F.C. Neidhardt, R. Curtiss III, J.L. Ingraham, E.C.C. Lin, K.B. Low, B. Magasanik, W.S. Reznikoff, M. Riley, M. Schaechter, and H.E. Umbarger, eds.). American Society for Microbiology Press, Washington, D.C., p. 821.

    Google Scholar 

  21. Record, M.T., Jr., W.S. Reznikoff, M.L. Craig, K.L. McQuaide, and P.J. Schlax. 1996. Escherichia coli RNA polymerase (Eσ70), promoters, and the kinetics of the steps of transcription initiation. In Escherichia coli and Salmonella: Cellular and Molecular Biology (F.C. Neidhardt, R. Curtiss III, J.L. Ingraham, E.C.C. Lin, K.B. Low, B. Magasanik, W.S. Reznikoff, M. Riley, M. Schaechter, and H.E. Umbarger, eds.). American Society for Microbiology Press, Washington, D.C., pp. 792–820.

    Google Scholar 

  22. Al-Karadaghi, S., N. Davydova, I. Eliseikina, M. Garber, A. Liljas, N. Nevskaya, S. Nikonov, and S. Tishchenko, 2000. Ribosomal proteins and their structral transitions on and off the ribosome. In The Ribosome Structure, Function, Antibiotics and Cellular Interactions (R.A. Garrett, S.R. Douthwaite, A. Lilijas, A.T. Matheson, P.B. Moore, and H.F. Noller, eds.). American Society for Microbiology Press, Washington, D.C., pp. 65–72.

    Google Scholar 

  23. Mathews, C.K. and K.E. van Holde, 1990. Biochemistry. Benjamin/Cummings, Redwood City, Calif.

    Google Scholar 

  24. Noller, H.F. and M. Nomura. 1996. Ribosomes. In Escherichia coli and Salmonella: Cellular and Molecular Biology (F.C. Neidhardt, R. Curtiss III, J.L. Ingraham, E.C.C. Lin, K.B. Low, B. Magasanik, W.S. Reznikoff, M. Riley, M. Schaechter, and H.E. Umbarger, eds.). American Society for Microbiology Press, Washington, D.C., pp. 104–125.

    Google Scholar 

  25. Douthwaite, S. and B. Vester, 2000. Macrolide resistance conferred by alterations in the ribosome target site. In The Ribosome Structure, Function, Antibiotics and Cellular Interactions (R.A. Garrett, S.R. Douthwaite, A. Lilijas, A.T. Matheson, P.B. Moore, and H.F. Noller, eds.). American Society for Microbiology Press, Washington, D.C., pp. 431–439.

    Google Scholar 

  26. Hershey, J.W. 1987. Protein synthesis. In Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology (F.C. Neidhardt, J.L. Ingraham, B. Magasanik, K.B. Low, M. Schaechter, and H.E. Umbarger, eds.). American Society for Microbiology Press, Washington, D.C., pp. 614–647.

    Google Scholar 

  27. Mandelstam, J., K. McQuillen, and I. Dawes. 1986. Biochemistry of Bacterial Growth. Blackwell, Boston.

    Google Scholar 

  28. Baron, C., D. O’Callaghan, and E. Lanka. 2002. Bacterial secrets of secretion: Euro-Conference on the biology of type IV secretion process. Molecular Microbiology 43:1359–1365.

    Article  PubMed  CAS  Google Scholar 

  29. Fernández, L.A., and J. Berenguer. 2000. Secretion and assembly of regular surface structures in Gram-negative bacteria. FEMS Microbiology Reviews 23:21–44.

    Google Scholar 

  30. Saier, M.H. 2001. Families of transporters: A phylogenic overview. In Microbial Transport Systems (G. Winkelmann, ed.). Wiley-VCH, New York, pp. 1–22.

    Google Scholar 

  31. Saier, M.H., M.J. Fagan, C. Hoischen, and J. Reizer. 1993. Transport mechanisms. In Bacillus subtilis and Other Gram-Positive Bacteria (A.L. Sonenshein, J.A. Hoch, and R. Losick, eds.). American Society for Microbiology Press, Washington, D.C., pp. 133–156.

    Google Scholar 

  32. Binet, R., S. Létoffé, J.M. Ghigo, P. Delepelaire, and C. Wandersman. 1997. Protein secretion by gram-negative bacterial ABC exporters—a review. Gene 192:7–11.

    Article  PubMed  CAS  Google Scholar 

  33. Tjalsma, H., A. Bolhuis, J.D.H. Jongbloed, S. Bron, and J. van Dijl. 2000. Signal peptidedependent protein transport in Bacillus subtilis: A genome-based survey of the secretome. Microbiology and Molecular Biology Reviews 64:515–547.

    Article  PubMed  CAS  Google Scholar 

  34. Aizawa, S.-I. 2001. Bacterial flagella and type III secretion systems. FEMS Microbiology Letters 202:157–164.

    Article  PubMed  CAS  Google Scholar 

  35. Delepelaire, P. and C. Wandersman. 2001. Protein export and secretion in Gram-negative bacteria. In Microbial Transport Systems (G. Winkelmann, ed.). Wiley-VCH, New York, pp. 165–208.

    Google Scholar 

  36. Christie, P.J. and A. Covacci. 2000. Bacterial type IV secretion systems: DNA conjugation machines adopted for export of virulence factors. In Cellular Microbiology (P. Cossart, P. Boquet, S. Normark, and R. Rappuoli, eds.). American Society for Microbiology Press, Washington, D.C., pp. 265–273.

    Google Scholar 

  37. Schesser, K., M.S. Francis, Å. Forsberg, and H. Wolf-Watz. 2000. Type III secretion systems in animal-and plant-interacting bacteria. In Cellular Microbiology (P. Cossart, P. Boquet, S. Normark, and R. Rappuoli, eds.). American Society for Microbiology Press, Washington, D.C., pp. 239–263.

    Google Scholar 

  38. Wandersman, C. 1996. Secretion across the bacterial outer membrane. In Escherichia coli and Salmonella: Cellular and Molecular Biology (F.C. Neidhardt, R. Curtiss III, J.L. Ingraham, E.C.C. Lin, K.B. Low, B. Magasanik, W.S. Reznikoff, M. Riley, M. Schaechter, and H.E. Umbarger, eds.). American Society for Microbiology Press, Washington, D.C., pp. 955–966.

    Google Scholar 

  39. Murphy, C.K. and J. Beckwith. 1996. Export of proteins to the cell envelope in Escherichia coli. In Escherichia coli and Salmonella: Cellular and Molecular Biology (F.C. Neidhardt, R. Curtiss III, J.L. Ingraham, E.C.C. Lin, K.B. Low, B. Magasanik, W.S. Reznikoff, M. Riley, M. Schaechter, and H.E. Umbarger, eds.). American Society for Microbiology Press, Washington, D.C., pp. 967–978.

    Google Scholar 

  40. Hettmann, T., C.L. Schmidt, S. Anemüller, U. Zähringer, H. Moll, A. Petersen, and G. Schäfer. 1998. Cytochrome b558/566 from the archaeon Sulfolobus acidocoldarus. Journal of Biological Chemistry 273:12032–12040.

    Article  PubMed  CAS  Google Scholar 

  41. Sumper, M. 1987. Halobacterial glycoprotein synthesis. Biochimie Biophysica Acta 907:69–79.

    Google Scholar 

  42. Maras, B., V. Consalvi, R. Chiaraluce, L. Politi, M. De Rosa, F. Bossa, R. Scandurra, and D. Barra. 1992. The protein sequence of glutamate dehydrogenase from Sulfolobus solfataricus, a thermoacidophilic archaebacterium. European Journal of Biochemistry 203:81–87.

    Article  PubMed  CAS  Google Scholar 

  43. Sahl, H.-G. and G. Bierbaum. 1998. Lantibiotics: Biosynthesis and biological activity of uniquely modified peptides from Gram-positive bacteria. Annual Review of Microbiology 52:41–79.

    Article  PubMed  CAS  Google Scholar 

  44. Zuber, P., M.M. Nakano, and M.A. Marahiel. 1993. Peptide antibiotics. In Bacillus subtilis and Other Gram-Positive Bacteria (A.L. Sonenshein, J.A. Hoch, and R. Losick, eds.). American Society for Microbiology Press, Washington, D.C., pp. 897–916.

    Google Scholar 

  45. Kertesz, M.A. 1999. Riding the sulfur cycle—metabolism of sulfonates and sulfate esters in Gram-negative bacteria. FEMS Microbiology Reviews 24:135–175.

    Google Scholar 

  46. Diks, A. 1999. Bacillus subtilis spore coat. Microbiology and Molecular Biology Reviews 63:1–29.

    Google Scholar 

  47. McAfee, J.G., S.P. Edmondson, P.K. Datta, J.W. Shriver, and R. Gupta. 1995. Gene cloning, expression, and characterization of the Sac7 proteins from the hyperthermophile Sulfolobus acidocaldarius. Biochemistry 34:10063–10077.

    Article  PubMed  CAS  Google Scholar 

  48. Sandman, K. and J.N. Reeve. 2001. Chromosome packing by archaeal histones. Advances in Applied Microbiology 50:75–100.

    Article  PubMed  CAS  Google Scholar 

  49. Beale, S.I. 1996. Biosynthesis of Hemes. In Escherichia coli and Salmonella: Cellular and Molecular Biology (F.C. Neidhardt, R. Curtiss III, J.L. Ingraham, E.C.C. Lin, K.B. Low, B. Magasanik, W.S. Reznikoff, M. Riley, M. Schaechter, and H.E. Umbarger, eds.). American Society for Microbiology Press, Washington, D.C., pp. 731–748.

    Google Scholar 

  50. Thöny-Meyer, L. 1997. Biogenesis of respiratory chtochromes in bacteria. Microbiology and Molecular Biology Reviews 61:337–376.

    PubMed  Google Scholar 

  51. Lengeler, J.W. and P.W. Postma. 1999. Global regulatory networks and signal transduction pathways. In Biology of the Prokaryotes (J.W. Lengeler, G. Drews, and H.G. Schlegel, eds.). Blackwell, New York, pp. 491–523.

    Google Scholar 

  52. Madigan, M.T., J.M. Martinko, and J. Parker. 2003. Brock Biology of Microorganisms. Prentice Hall, Upper Saddle River, N.J.

    Google Scholar 

Additional Reading

  • Fruton, J.S. and S. Simmonds. 1958. General Biochemistry. John Wiley, New York.

    Google Scholar 

Secretion Systems

  • Goosney, D.L., S. Gruenheid, and B.B Finlay. 2000. Gut feelings: Enteropathogenic E. coli (EPEC) interactions with the host. Annual Review of Cell Developmental Biology 16:173–189.

    CAS  Google Scholar 

  • Hueck, C.J. 1998. Type III protein secretion systems in bacterial pathogens of animals and plants. Microbiology and Molecular Biology Reviews 62:379–433.

    PubMed  CAS  Google Scholar 

  • Putman, M. H.W. van Veen, and W.N. Konings. 2000. Molecular properties of bacterial multidrug transporters. Microbiology and Molecular Biology Reviews 64:672–693.

    Article  PubMed  CAS  Google Scholar 

  • Salmond, G.P.C. and P.J. Reeves. 1993. Membrane traffic wardens and protein secretion in gram-negative bacteria. Trends in Biochemical Sciences 18:7–12.

    Article  PubMed  CAS  Google Scholar 

Posttranslational Processing

  • Faguy, D.M., S.F. Koval, and K.F. Jarrell. 1992. Correlation between glycosylation of flagellin proteins and sensitivity of flagellar filaments to Triton X-100 in methanogens. FEMS Microbiology Letters 90:129–134.

    Article  CAS  Google Scholar 

  • R.A. Garrett, S.R. Douthwaite, A. Lilijas, A.T. Matheson, P.B. Moore, and H.F. Noller (eds.). 2000. The Ribosome Structure, Function, Antibiotics and Cellular Interactions. American Society for Microbiology Press, Washington, D.C.

    Google Scholar 

  • Moens, S. and J. Vanderleyden. 1997. Glycoproteins in prokaryotes. Archives of Microbiology 168:169–175.

    Article  PubMed  CAS  Google Scholar 

Histone-Like Proteins

  • Xue, H., R. Guo, Y. Wen, D. Liu, and L. Huang. 2000. An abundant DNA binding protein form the hyperthermophilic archaeon Sulfolobus shibatae affects DNA supercoiling in a temperature-dependent fashion. Journal of Bacteriology 182:3929–3933.

    Article  PubMed  CAS  Google Scholar 

Transcription

  • Soppa, J. 2001. Basal and regulated transcription in archaea. Advances in Applied Microbiology 50:171–219.

    Article  PubMed  CAS  Google Scholar 

Heme and Cobalamin Synthesis

  • Dailey, H.A. (ed.). 1990. Biosynthesis of Hemes and Chlorophylls. McGraw-Hill, New York.

    Google Scholar 

  • O’Toole, G.A., M.R. Rondon, J.R. Trzebiatowski, S.-J. Suh, and J.C. Escalante-Semerena. 1996. Biosynthesis and utilization of adenosyl-cobalamin (coenzyme B12). In Escherichia coli and Salmonella: Cellular and Molecular Biology (F.C. Neidhardt, R. Curtiss III, J.L. Ingraham, E.C.C. Lin, K.B. Low, B. Magasanik, W.S. Reznikoff, M. Riley, M. Schaechter, and H.E. Umbarger, eds.). American Society for Microbiology Press, Washington, D.C., pp. 710–720.

    Google Scholar 

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(2005). Organization and Cellular Processing. In: Structural and Functional Relationships in Prokaryotes. Springer, New York, NY. https://doi.org/10.1007/0-387-27125-2_12

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