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References
M. Ramanathan, B. Weinstock-Guttman, L.T. Nguyen, D. Badgett, C. Miller, K. Patrick, C. Brownscheidle, and L. Jacobs. In vivo gene expression revealed by cDNA arrays: the pattern in relapsing-remitting multiple sclerosis patients compared with normal subjects. J. Neuroimmunol. 116:213–219 (2001).
B. Weinstock-Guttman, D. Badgett, K. Patrick, L. Hartrich, R. Santos, D. Hall, M. Baier, J. Feichter, and M. Ramanathan. Genomic effects of IFN-beta in multiple sclerosis patients. J. Immunol. 171:2694–2702 (2003).
D. Bhadra. An Interactive Visual Framework for Detecting Clusters of a Multidimensional Dataset, State University of New York at Buffalo, 2001.
P.E. Hoffman, G.G. Grinstein, and K. Marx. DNA Visual and Analytic Data Mining., In IEEE Visualization 97, Phoenix, AZ., pp. 437–441, 1997.
V.G. Tusher, R. Tibshirani, and G. Chu. Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl. Acad. Sci. U.S.A. 98:5116–5121 (2001).
S.K. Murthy, S. Kasif, and S. Salzberg. OC1: A Randomized Induction of Oblique Decision Trees, National Conference on Artificial Intelligence, pp. 322–327, 1993.
J. Cohen. A coefficient of agreement for nominal scales. Educational and Psychological Measurement 20:37–46 (1960).
D.A. Notterman, U. Alon, A.J. Sierk, and A.J. Levine. Transcriptional gene expression profiles of colorectal adenoma, adenocarcinoma, and normal tissue examined by oligonucleotide arrays. Cancer Res. 61:3124–3180 (2001).
X. Chen, S.T. Cheung, S. So, S.T. Fan, C. Barry, J. Higgins, K.M. Lai, J. Ji, S. Dudoit, I.O. Ng, M. Van De Rijn, D. Botstein, and P.O. Brown. Gene expression patterns in human liver cancers. Mol. Biol. Cell 13:1929–1039 (2002).
M.E. Schaner, D.T. Ross, G. Ciaravino, T. Sorlie, O. Troyanskaya, M. Diehn, Y.C. Wang, G.E. Duran, T.L. Sikic, S. Caldeira, H. Skomedal, I.P. Tu, T. Hernandez-Boussard, S.W. Johnson, P.J. O’Dwyer, M.J. Fero, G.B. Kristensen, A.L. Borresen-Dale, T. Hastie, R. Tibshirani, M. Van De Rijn, N.N. Teng, T.A. Longacre, D. Botstein, P.O. Brown, and B. I. Sikic. Gene Expression Patterns in Ovarian Carcinomas. Mol. Biol. Cell 14:1376–4386 (2003).
M. Bittner, P. Meltzer, Y. Chen, Y. Jiang, E. Seftor, M. Hendrix, M. Radmacher, R. Simon, Z. Yakhini, A. Ben-Dor, N. Sampas, E. Dougherty, E. Wang, F. Marincola, C. Gooden, J. Lueders, A. Glatfelter, P. Pollock, J. Carpten, E. Gillanders, D. Leja, K. Dietrich, C. Beaudry, M. Berens, D. Alberts, and V. Sondak. Molecular classification of cutaneous malignant melanoma by gene expression profiling. Nature 406:536–540. (2000).
P.J. Diggle. Time Series, Clarendon Press, Oxford, 1990.
M.O. Ward. Integrating multiple methods for visualizing multivariate data. IEEE Visualization Conference 326–336 (1994).
N.S. Holter, M. Mitra, A. Maritan, M. Cieplak, J.R. Banavar, and N.V. Fedoroff. Fundamental patterns underlying gene expression profiles: simplicity from complexity. Proc. Natl. Acad. Sci. U.S.A. 97:8409–8414 (2000).
S. Hautaniemi, O. Yli-Harja, J. Astola, P. Kauraniemi, A. Kallioniemi, M. Wolf, J. Ruis, S. Mousses, and O. Kallioniemi. Analysis and visualization of gene expression micorarray data in human cancer using self-organizing maps. Machine Learning: Special Issue on Methods in Functional Genomics (2003).
Y. Zhou and J. Liu. AVA: visual analysis of gene expression microarray data. Bioinformatics 19:293–294 (2003).
C.A. Iacobuzio-Donahue, A. Maitra, M. Olsen, A.W. Lowe, N.T. van Heek, C. Rosty, K. Walter, N. Sato, A. Parker, R. Ashfaq, E. Jaffee, B. Ryu, J. Jones, J.R. Eshleman, C.J. Yeo, J.L. Cameron, S.E. Kern, R.H. Hruban, P.O. Brown, and M. Goggins. Exploration of global gene expression patterns in pancreatic adenocarcinoma using cDNA microarrays. Am. J. Pathol. 162:1151–1162 (2003).
T.O. Nielsen, R.B. West, S.C. Linn, O. Alter, M.A. Knowling, J.X. O’Connell, S. Zhu, M. Fero, G. Sherlock, J.R. Pollack, P.O. Brown, D. Botstein, and M. van de Rijn. Molecular characterisation of soft tissue tumours: a gene expression study. Lancet 359:1301–1307 (2002).
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Ramanathan, M., Zhang, L., Zhang, A. (2004). Vizstruct: A Multidimensional Visualization Algorithm for Gene Expression. In: D’Argenio, D.Z. (eds) Advanced Methods of Pharmacokinetic and Pharmacodynamic Systems Analysis Volume 3. The International Series in Engineering and Computer Science, vol 765. Springer, Boston, MA. https://doi.org/10.1007/0-306-48523-0_10
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DOI: https://doi.org/10.1007/0-306-48523-0_10
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