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Learning and Designing Stochastic Processes from Logical Constraints

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Quantitative Evaluation of Systems (QEST 2013)

Part of the book series: Lecture Notes in Computer Science ((LNTCS,volume 8054))

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Abstract

Continuous time Markov Chains (CTMCs) are a convenient mathematical model for a broad range of natural and computer systems. As a result, they have received considerable attention in the theoretical computer science community, with many important techniques such as model checking being now mainstream. However, most methodologies start with an assumption of complete specification of the CTMC, in terms of both initial conditions and parameters. While this may be plausible in some cases (e.g. small scale engineered systems) it is certainly not valid nor desirable in many cases (e.g. biological systems), and it does not lead to a constructive approach to rational design of systems based on specific requirements. Here we consider the problems of learning and designing CTMCs from observations/ requirements formulated in terms of satisfaction of temporal logic formulae. We recast the problem in terms of learning and maximising an unknown function (the likelihood of the parameters) which can be numerically estimated at any value of the parameter space (at a non-negligible computational cost). We adapt a recently proposed, provably convergent global optimisation algorithm developed in the machine learning community, and demonstrate its efficacy on a number of non-trivial test cases.

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References

  1. Alur, R., Feder, T., Henzinger, T.A.: The benefits of relaxing punctuality. J. ACM 43(1), 116–146 (1996)

    Article  MathSciNet  MATH  Google Scholar 

  2. Andersson, H., Britton, T.: Stochastic Epidemic Models and Their Statistical Analysis. Springer (2000)

    Google Scholar 

  3. Andreychenko, A., Mikeev, L., Spieler, D., Wolf, V.: Approximate maximum likelihood estimation for stochastic chemical kinetics. EURASIP Journal on Bioinf. and Sys. Bio. 9 (2012)

    Google Scholar 

  4. Baier, C., Haverkort, B., Hermanns, H., Katoen, J.P.: Model checking continuous-time Markov chains by transient analysis. IEEE TSE 29(6), 524–541 (2003)

    Google Scholar 

  5. Barnes, C.P., Silk, D., Sheng, X., Stumpf, M.P.: Bayesian design of synthetic biological systems. PNAS USA 108(37), 15190–15195 (2011)

    Article  Google Scholar 

  6. Bishop, C.M.: Pattern Recognition and Machine Learning. Springer (2006)

    Google Scholar 

  7. Bradley, J.T., Gilmore, S.T., Hillston, J.: Analysing distributed internet worm attacks using continuous state-space approximation of process algebra models. J. Comput. Syst. Sci. 74(6), 1013–1032 (2008)

    Article  MathSciNet  MATH  Google Scholar 

  8. Chen, T., Diciolla, M., Kwiatkowska, M.Z., Mereacre, A.: Time-bounded verification of CTMCs against real-time specifications. In: Fahrenberg, U., Tripakis, S. (eds.) FORMATS 2011. LNCS, vol. 6919, pp. 26–42. Springer, Heidelberg (2011)

    Chapter  Google Scholar 

  9. Cover, T., Thomas, J.: Elements of Information Theory, 2nd edn. Wiley (2006)

    Google Scholar 

  10. Durrett, R.: Essentials of stochastic processes. Springer (2012)

    Google Scholar 

  11. Gillespie, D.T.: Exact stochastic simulation of coupled chemical reactions. J. of Physical Chemistry 81(25) (1977)

    Google Scholar 

  12. Jha, S.K., Clarke, E.M., Langmead, C.J., Legay, A., Platzer, A., Zuliani, P.: A bayesian approach to model checking biological systems. In: Degano, P., Gorrieri, R. (eds.) CMSB 2009. LNCS, vol. 5688, pp. 218–234. Springer, Heidelberg (2009)

    Chapter  Google Scholar 

  13. Jha, S.K., Langmead, C.J.: Synthesis and infeasibility analysis for stochastic models of biochemical systems using statistical model checking and abstraction refinement. Theor. Comp. Sc. 412(21), 2162–2187 (2011)

    Article  MathSciNet  MATH  Google Scholar 

  14. Kennedy, M., O’Hagan, A.: Bayesian calibration of computer models. Journal of the Royal Stat. Soc. Ser. B 63(3), 425–464 (2001)

    Article  MathSciNet  MATH  Google Scholar 

  15. Kwiatkowska, M., Norman, G., Parker, D.: Probabilistic symbolic model checking with PRISM: A hybrid approach. Int. Jour. on Softw. Tools for Tech. Transf. 6(2), 128–142 (2004)

    Google Scholar 

  16. Maler, O., Nickovic, D.: Monitoring temporal properties of continuous signals. In: Lakhnech, Y., Yovine, S. (eds.) FORMATS/FTRTFT 2004. LNCS, vol. 3253, pp. 152–166. Springer, Heidelberg (2004)

    Chapter  Google Scholar 

  17. Opper, M., Sanguinetti, G.: Variational inference for Markov jump processes. In: Proc. of NIPS (2007)

    Google Scholar 

  18. Rasmussen, C.E., Williams, C.K.I.: Gaussian Processes for Machine Learning. MIT Press (2006)

    Google Scholar 

  19. Romero, P.A., Krause, A., Arnold, F.H.: Navigating the protein fitness landscape with Gaussian processes. PNAS USA 110(3), E193–E201 (2013)

    Article  Google Scholar 

  20. Srinivas, N., Krause, A., Kakade, S., Seeger, M.: Information-theoretic regret bounds for Gaussian process optimisation in the bandit setting. IEEE Trans. Inf. Th. 58(5), 3250–3265 (2012)

    Article  MathSciNet  Google Scholar 

  21. Vezhnevets, A., Ferrari, V., Buhmann, J.: Weakly supervised structured output learning for semantic segmentation. In: Comp. Vision and Pattern Recog. (2012)

    Google Scholar 

  22. Younes, H.L.S., Simmons, R.G.: Statistical probabilistic model checking with a focus on time-bounded properties. Inf. Comput. 204(9), 1368–1409 (2006)

    Article  MathSciNet  MATH  Google Scholar 

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Bortolussi, L., Sanguinetti, G. (2013). Learning and Designing Stochastic Processes from Logical Constraints. In: Joshi, K., Siegle, M., Stoelinga, M., D’Argenio, P.R. (eds) Quantitative Evaluation of Systems. QEST 2013. Lecture Notes in Computer Science, vol 8054. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-40196-1_7

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  • DOI: https://doi.org/10.1007/978-3-642-40196-1_7

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-40195-4

  • Online ISBN: 978-3-642-40196-1

  • eBook Packages: Computer ScienceComputer Science (R0)

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