Bioinformatics Research and Applications

8th International Symposium, ISBRA 2012, Dallas, TX, USA, May 21-23, 2012. Proceedings

  • Leonidas Bleris
  • Ion Măndoiu
  • Russell Schwartz
  • Jianxin Wang
Conference proceedings ISBRA 2012

DOI: 10.1007/978-3-642-30191-9

Part of the Lecture Notes in Computer Science book series (LNCS, volume 7292)

Table of contents (31 papers)

  1. Front Matter
  2. Trie-based Apriori Motif Discovery Approach
    Isra Al-Turaiki, Ghada Badr, Hassan Mathkour
    Pages 1-12
  3. Inapproximability of (1,2)-Exemplar Distance
    Laurent Bulteau, Minghui Jiang
    Pages 13-23
  4. A Mixed Integer Programming Model for the Parsimonious Loss of Heterozygosity Problem
    Daniele Catanzaro, Martine Labbé, Bjarni V. Halldórsson
    Pages 24-35
  5. Reconstruction of Transcription Regulatory Networks by Stability-Based Network Component Analysis
    Xi Chen, Chen Wang, Ayesha N. Shajahan, Rebecca B. Riggins, Robert Clarke, Jianhua Xuan
    Pages 36-47
  6. A Transcript Perspective on Evolution
    Yann Christinat, Bernard M. E. Moret
    Pages 48-59
  7. Identifying Rogue Taxa through Reduced Consensus: NP-Hardness and Exact Algorithms
    Akshay Deepak, Jianrong Dong, David Fernández-Baca
    Pages 87-98
  8. GTP Supertrees from Unrooted Gene Trees: Linear Time Algorithms for NNI Based Local Searches
    Paweł Górecki, J. Gordon Burleigh, Oliver Eulenstein
    Pages 102-114
  9. A Robinson-Foulds Measure to Compare Unrooted Trees with Rooted Trees
    Paweł Górecki, Oliver Eulenstein
    Pages 115-126
  10. P-Binder: A System for the Protein-Protein Binding Sites Identification
    Fei Guo, Shuai Cheng Li, Lusheng Wang
    Pages 127-138
  11. Non-identifiable Pedigrees and a Bayesian Solution
    Bonnie Kirkpatrick
    Pages 139-152
  12. POPE: Pipeline of Parentally-Biased Expression
    Victor Missirian, Isabelle Henry, Luca Comai, Vladimir Filkov
    Pages 177-188
  13. On Optimizing the Non-metric Similarity Search in Tandem Mass Spectra by Clustering
    Jiří Novák, David Hoksza, Jakub Lokoč, Tomáš Skopal
    Pages 189-200
  14. On the Comparison of Sets of Alternative Transcripts
    Aïda Ouangraoua, Krister M. Swenson, Anne Bergeron
    Pages 201-212

About these proceedings

Introduction

This book constitutes the refereed proceedings of the International Symposium on Bioinformatics Research and Applications, ISBRA 2012, held in Dallas, Texas, USA, in May 2012. The 26 revised full papers presented together with five invited talks were carefully reviewed and selected from 66 submissions. The papers address issues on various aspects of bioinformatics and computational biology and their applications.

Keywords

comparative genomics evolutionary biology protein sequences identification systems biology visualization

Editors and affiliations

  • Leonidas Bleris
    • 1
  • Ion Măndoiu
    • 2
  • Russell Schwartz
    • 3
  • Jianxin Wang
    • 4
  1. 1.Departments of Bioengineering and Electrical EngineeringUniversity of Texas at DallasRichardsonUSA
  2. 2.Department of Computer Science and EngineeringUniversity of ConnecticutStorrsUSA
  3. 3.Department of Biological SciencesCarnegie Mellon UniversityPittsburghUSA
  4. 4.School of Information Science and EngineeringCentral South UniversityChangshaChina

Bibliographic information

  • Copyright Information Springer-Verlag Berlin Heidelberg 2012
  • Publisher Name Springer, Berlin, Heidelberg
  • eBook Packages Computer Science
  • Print ISBN 978-3-642-30190-2
  • Online ISBN 978-3-642-30191-9
  • Series Print ISSN 0302-9743
  • Series Online ISSN 1611-3349