Bioinformatics Research and Applications

8th International Symposium, ISBRA 2012, Dallas, TX, USA, May 21-23, 2012. Proceedings

Editors:

ISBN: 978-3-642-30190-2 (Print) 978-3-642-30191-9 (Online)

Table of contents (31 chapters)

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  1. Front Matter

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    Pages 1-12

    Trie-based Apriori Motif Discovery Approach

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    Pages 13-23

    Inapproximability of (1,2)-Exemplar Distance

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    Pages 24-35

    A Mixed Integer Programming Model for the Parsimonious Loss of Heterozygosity Problem

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    Pages 36-47

    Reconstruction of Transcription Regulatory Networks by Stability-Based Network Component Analysis

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    Pages 48-59

    A Transcript Perspective on Evolution

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    Pages 60-71

    A Fast Algorithm for Computing the Quartet Distance for Large Sets of Evolutionary Trees

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    Pages 72-83

    Error Propagation in Sparse Linear Systems with Peptide-Protein Incidence Matrices

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    Pages 84-86

    Models and Algorithmic Tools for Computational Processes in Cellular Biology: Recent Developments and Future Directions

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    Pages 87-98

    Identifying Rogue Taxa through Reduced Consensus: NP-Hardness and Exact Algorithms

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    Pages 99-101

    Analytics Approaches for the Era of 10,000* Genomes *and Counting

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    Pages 102-114

    GTP Supertrees from Unrooted Gene Trees: Linear Time Algorithms for NNI Based Local Searches

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    Pages 115-126

    A Robinson-Foulds Measure to Compare Unrooted Trees with Rooted Trees

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    Pages 127-138

    P-Binder: A System for the Protein-Protein Binding Sites Identification

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    Pages 139-152

    Non-identifiable Pedigrees and a Bayesian Solution

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    Pages 153-164

    Iterative Piecewise Linear Regression to Accurately Assess Statistical Significance in Batch Confounded Differential Expression Analysis

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    Pages 165-176

    Reconstruction of Network Evolutionary History from Extant Network Topology and Duplication History

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    Pages 177-188

    POPE: Pipeline of Parentally-Biased Expression

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    Pages 189-200

    On Optimizing the Non-metric Similarity Search in Tandem Mass Spectra by Clustering

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    Pages 201-212

    On the Comparison of Sets of Alternative Transcripts

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    Pages 213-224

    MURPAR: A Fast Heuristic for Inferring Parsimonious Phylogenetic Networks from Multiple Gene Trees

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