Skip to main content
Log in

Points of significance

Comparing classifier performance with baselines

  • This Month
  • Published:

From Nature Methods

View current issue Submit your manuscript

All animals are equal, but some animals are more equal than others. —George Orwell

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1: Three baseline classifiers applied to an imbalanced dataset with 10 diseased and 30 normal cells.
Fig. 2: Performance metrics of various baselines.
Fig. 3: Distribution of uniform and proportional baseline performance metrics for an imbalanced dataset.
Fig. 4: Two baselines (uniform and proportional) and LDA sensitivity for each fetal health class.

References

  1. Lever, J., Krzywinski, M. & Altman, N. Nat. Methods 13, 541–542 (2016).

    Article  CAS  Google Scholar 

  2. Krzywinski, M. & Altman, N. Nat. Methods 14, 757–758 (2017).

    Article  CAS  Google Scholar 

  3. Bzdok, D., Krzywinski, M. & Altman, N. Nat. Methods 15, 5–6 (2018).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Lever, J., Krzywinski, M. & Altman, N. Nat. Methods 13, 603–604 (2016).

    Article  CAS  Google Scholar 

  5. Megahed, F. M. et al. Nat. Methods 18, 1270–1272 (2021).

    Article  CAS  PubMed  Google Scholar 

  6. Altman, N. & Krzywinski, M. Nat. Methods 12, 999–1000 (2015).

    Article  CAS  PubMed  Google Scholar 

  7. Ayres-de Campos, D., Bernardes, J., Garrido, A., Marques-de-Sá, J. & Pereira-Leite, L. J. Matern. Fetal Med. 9, 311–318 (2000).

    Article  CAS  PubMed  Google Scholar 

  8. Fricker, R. D. Jr., Rigdon, S. E. & Montgomery, D. C. Introduction to Probability, Statistics, and Data Science with R (Cambridge Univ. Press, 2023).

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Martin Krzywinski.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Megahed, F.M., Chen, YJ., Jones-Farmer, L.A. et al. Comparing classifier performance with baselines. Nat Methods 21, 546–548 (2024). https://doi.org/10.1038/s41592-024-02234-5

Download citation

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1038/s41592-024-02234-5

  • Springer Nature America, Inc.

Navigation