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Reply to ‘Inflated performance measures in enhancer–promoter interaction-prediction methods’

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Fig. 1: Relationship between enhancer–TSS genomic distance and JEME performance.

Data availability

The data that support the findings of this study are available at http://yiplab.cse.cuhk.edu.hk/jeme/.

References

  1. Cao, F. & Fullwood, M. J. Nat. Genet. https://doi.org/10.1038/s41588-019-0434-7 (2019).

  2. Cao, Q. et al. Nat. Genet. 49, 1428–1436 (2017).

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  3. Roy, S. et al. Nucleic Acids Res. 43, 8694–8712 (2015).

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Authors and Affiliations

  1. School of Biomedical Sciences, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong

    Qin Cao

  2. Department of Computer Science and Engineering, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong

    Kevin Y. Yip

  3. Hong Kong Bioinformatics Centre, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong

    Kevin Y. Yip

  4. CUHK-BGI Innovation Institute of Trans-omics, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong

    Kevin Y. Yip

  5. Hong Kong Institute of Diabetes and Obesity, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong

    Kevin Y. Yip

Authors
  1. Qin Cao
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  2. Kevin Y. Yip
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Contributions

Q.C. and K.Y.Y. designed the analyses. Q.C. carried out the analyses. Q.C. and K.Y.Y. interpreted the data and prepared the manuscript.

Corresponding author

Correspondence to Kevin Y. Yip.

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The authors declare no competing interests.

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Cao, Q., Yip, K.Y. Reply to ‘Inflated performance measures in enhancer–promoter interaction-prediction methods’. Nat Genet 51, 1201–1202 (2019). https://doi.org/10.1038/s41588-019-0452-5

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  • DOI: https://doi.org/10.1038/s41588-019-0452-5

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