Spatial transcriptomics offers a glimpse of how microbiomes interact with their hosts.
References
Saarenpää, S. et al. Nat. Biotechnol. https://doi.org/10.1038/s41587-023-01979-2 (2023).
Lötstedt, B., Stražar, M., Xavier, R., Regev, A. & Vickovic, S. Nat. Biotechnol. https://doi.org/10.1038/s41587-023-01988-1 (2023).
Ståhl, P. L. et al. Science 353, 78–82 (2016).
Rodriques, S. G. et al. Science 363, 1463–1467 (2019).
Galeano Niño, J. L. et al. Nature 611, 810–817 (2022).
Lyu, L. et al. Genome Res. 33, 401–411 (2023).
McKellar, D. W. et al. Nat. Biotechnol. 41, 513–520 (2023).
Chen, A. et al. Cell 185, 1777–1792.e21 (2022).
Mark Welch, J. L., Rossetti, B. J., Rieken, C. W., Dewhirst, F. E. & Borisy, G. G. Proc. Natl Acad. Sci. USA 113, E791–E800 (2016).
Shi, H. et al. Nature 588, 676–681 (2020).
Dar, D., Dar, N., Cai, L. & Newman, D. K. Science 373, eabi4882 (2021).
Shalon, D. et al. Nature 617, 581–591 (2023).
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I.D.V. is a co-founder of Kanvas Biosciences. I.N. declares no competing interests.
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Ntekas, I., De Vlaminck, I. Spatial methods for microbiome–host interactions. Nat Biotechnol (2023). https://doi.org/10.1038/s41587-023-01996-1
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DOI: https://doi.org/10.1038/s41587-023-01996-1
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