Skip to main content

Advertisement

Log in

GENOME EDITING

Machine learning finds Cas9-edited genotypes

  • News & Views
  • Published:

From Nature Biomedical Engineering

View current issue Submit your manuscript

A machine-learning algorithm reliably predicts Cas9-edited genotypes arising from the repair of DNA double-strand breaks in mouse cells and human cells.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1: The major editing outcomes after Cas9-mediated DNA cleavage can be predicted by machine learning.

References

  1. Koike-Yusa, H. et al. Nat. Biotechnol. 32, 267–273 (2013).

    Article  Google Scholar 

  2. van Overbeek, M. et al. Mol. Cell 63, 633–646 (2016).

    Article  Google Scholar 

  3. Bae, S., Kweon, J., Kim, H. S. & Kim, J.-S. Nat. Methods 11, 705–706 (2014).

    Article  CAS  Google Scholar 

  4. Shen, M. W. et al. Nature https://doi.org/10.1038/s41586-018-0686-x (2018).

    Article  PubMed  PubMed Central  Google Scholar 

  5. Kim, H. K. et al. Nat. Biotechnol. 36, 239–241 (2018).

    Article  CAS  Google Scholar 

  6. Kosicki, M., Tomberg, K. & Bradley, A. R. Nat. Biotechnol. 36, 765–771 (2018).

    Article  CAS  Google Scholar 

  7. Ma, H. et al. Nature 548, 413–419 (2017).

    Article  CAS  Google Scholar 

  8. Park, C.-Y. et al. Cell Stem Cell 17, 213–220 (2015).

    Article  CAS  Google Scholar 

  9. Komor, A. C. et al. Nature 533, 420–424 (2016).

    Article  CAS  Google Scholar 

  10. Gaudelli, N. M. et al. Nature 551, 464–471 (2017).

    Article  CAS  Google Scholar 

  11. Nishida, K. et al. Science 353, aaf8729 (2016).

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Jin-Soo Kim.

Ethics declarations

Competing interests

J.-S.K. is a co-founder of and holds stock in ToolGen, Inc., a company focused on therapeutic genome editing.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Bae, S., Kim, JS. Machine learning finds Cas9-edited genotypes. Nat Biomed Eng 2, 892–893 (2018). https://doi.org/10.1038/s41551-018-0327-6

Download citation

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1038/s41551-018-0327-6

  • Springer Nature Limited

This article is cited by

Navigation