The predicted distribution of globular proteins over folding types in five complete genomes differs from the tendencies observed in known protein structures. The ratio between the number of predicted membrane and globular proteins is conserved.
This is a preview of subscription content, log in via an institution to check access.
References
Chothia, C. Nature 357, 543–544 (1992).
Orengo, C.A., Jones, D.T., Thornton, J.M. Nature 372, 631–634 (1994).
Goffeau, A. et al. Science 274, 546–567 (1996).
Bult, C.J. et al. Science 273, 1058–1073 (1996).
Fleischmann, R.D. et al. Science 269, 496–512 (1995).
Fraser, C.M. et al. Science 270, 397–403 (1995).
Himmelreich, R. et al. Nucleic Acids Res. 24, 4420–4449 (1996).
Casari, G., Daruvar, de, A., Sander, C. & Schneider, R. Trends Genet. 12, 244–245 (1996).
Bernstein, F.C. et al. J. Mol. Biol. 112, 535–542 (1977).
Goffeau, A., Slonimski, P., Nakai, K. & Risler, J.L. Yeast 9, 691–702 (1993).
Bork, P. et al. Prot. Sci. 1, 1677–1690 (1992).
Mushegian, A.R. & Koonin, E.V. Proc. Natl. Acad. Sci. USA 93, 10268–10273 (1996).
Razin, S. FEMS Microbiol. Lett. 100, 423–432 (1992).
Labedan, B. & Riley, M. Mol. Biol. Evol. 12, 980–987 (1995).
Koonin, E.V., Tatusov, R.L. & Rudd, K.E. Proc. Natl. Acad Sci. USA 92, 11921–11925 (1995).
Brenner, S.E., Hubbard, T., Murzin, A. & Chothia, C. Nature 378, 140 (1995).
Termier, M. & Kalogeropoulos, A. yeast 12, 369–484 (1996).
Bork, P., Ouzounis, C. & Sander, C. Curr. Opin. Struct. Biol. 4, 393–403 (1994).
Bork, P. et al. Mol. Microbiol. 16, 955–967 (1995).
Koonin, E.V., Tatusov, R.L. & Rudd, K.E. Meth. Enz. 266, 295–322 (1996).
George, D.G., Barker, W.C., Mewes, H.W., Pfeiffer, F. & Tsugita, A. Nucl. Acids Res. 24, 17–20 (1996).
Frishman, D. & Argos, P. Proteins: Strut. Func. Genet. 27, 329–335 (1997).
Pearson, W.R. Meth. Enz. 183, 63–98 (1990).
Frishman, D. & Argos, P. Proteins: Struc. Func. Genet. 23, 566–579 (1995).
Frishman, D. & Argos, P. Prot. Engng. 9, 133–142 (1996).
Nakashima, H., Nishikawa, K. & Ooi, T. J. Biochem. 99, 153–162 (1986).
Wooton, J.C. Curr. Opin. Struct. Biol. 4, 413–421 (1994).
Thompson, J.D., Higgins, D.G., Gibson, T.J. Nucl. Acids Res. 22, 4673–4680 (1994).
Persson, B. & Argos, P. J. Mol. Biol. 237, 182–192 (1994).
Kyte, J. & Doolittle, R.F. J. Mol. Biol. 157, 105–132 (1982).
Frishman, D. & Mewes, H.-W. Trends. Genet. in the press (1997).
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Frishman, D., Mewes, H. Protein structural classes in five complete genomes. Nat Struct Mol Biol 4, 626–628 (1997). https://doi.org/10.1038/nsb0897-626
Received:
Accepted:
Issue Date:
DOI: https://doi.org/10.1038/nsb0897-626
- Springer Nature America, Inc.
This article is cited by
-
Structural Characterization of Open Reading Frame-Encoded Functional Genes from Tilapia Lake Virus (TiLV)
Molecular Biotechnology (2019)
-
A census of α-helical membrane proteins in double-stranded DNA viruses infecting bacteria and archaea
BMC Bioinformatics (2015)
-
Application of Mistic to improving the expression and membrane integration of histidine kinase receptors from Escherichia coli
Journal of Structural and Functional Genomics (2007)
-
PROMPT: a protein mapping and comparison tool
BMC Bioinformatics (2006)
-
Universal Sharing Patterns in Proteomes and Evolution of Protein Fold Architecture and Life
Journal of Molecular Evolution (2005)