A software tool based on gene model profiling improves analysis of alternative splice events in RNA sequencing (RNA-seq) data.
References
Griffith, M. et al. Nat. Methods 7, 843–847 (2010).
Carninci, P. et al. Science 309, 1559–1563 (2005).
Cloonan, N. et al. Nat. Methods 5, 613–619 (2008).
Mortazavi, A., Williams, B.A., McCue, K., Schaeffer, L. & Wold, B. Nat. Methods 5, 621–628 (2008).
Birol, I. et al. Bioinformatics 25, 2872–2877 (2009).
Zerbino, D.R. & Birney, E. Genome Res. 18, 821–829 (2008).
Guttman, M. et al. Nat. Biotechnol. 28, 503–510 (2010).
Trapnell, C. et al. Nat. Biotechnol. 28, 511–515 (2010).
Reimers, M. & Carey, V.J. Methods Enzymol. 411, 119–134 (2006).
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
Competing interests
The authors declare no competing financial interests.
Rights and permissions
About this article
Cite this article
Cloonan, N., Grimmond, S. Simplifying complexity. Nat Methods 7, 793–795 (2010). https://doi.org/10.1038/nmeth1010-793
Published:
Issue Date:
DOI: https://doi.org/10.1038/nmeth1010-793
- Springer Nature America, Inc.
This article is cited by
-
New approaches to Prunus transcriptome analysis
Genetica (2011)