Skip to main content
SpringerLink
Log in

motifStack for the analysis of transcription factor binding site evolution

  • Correspondence
  • Published:

From Nature Methods

View current issue Submit your manuscript

This is a preview of subscription content, log in via an institution to check access.

Access this article

Log in via an institution

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Figure 1: Effects of experimental and computational methods on motif clustering.

References

  1. Das, M.K. & Dai, H.-K. BMC Bioinformatics 8, S21 (2007).

    Article  Google Scholar 

  2. Mahony, S. & Benos, P.V. Nucleic Acids Res. 35, W253–W258 (2007).

    Article  Google Scholar 

  3. Gupta, S., Stamatoyannopoulos, J.A., Bailey, T.L. & Noble, W.S. Genome Biol. 8, R24 (2007).

    Article  Google Scholar 

  4. Zhao, G. et al. G3 2, 469–481 (2012).

    Article  CAS  Google Scholar 

  5. Nettling, M. et al. BMC Bioinformatics 16, 387 (2015).

    Article  Google Scholar 

  6. Shannon, P. et al. Genome Res. 13, 2498–2504 (2003).

    Article  CAS  Google Scholar 

Download references

Acknowledgements

We appreciate M. Enuameh and L. Ni for helpful discussion. S.A.W., M.H.B., and L.J.Z. were partly supported by National Human Genome Research Institute of the National Institutes of Health (R01HG004744-01).

Author information

Authors and Affiliations

  1. Department of Molecular, Cell and Cancer Biology, University of Massachusetts Medical School, Worcester, Massachusetts, USA

    Jianhong Ou, Scot A Wolfe, Michael H Brodsky & Lihua Julie Zhu

  2. Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts, USA

    Scot A Wolfe

  3. Program in Molecular Medicine, University of Massachusetts Medical School, Worcester, Massachusetts, USA

    Michael H Brodsky & Lihua Julie Zhu

  4. Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, Massachusetts, USA

    Lihua Julie Zhu

Authors
  1. Jianhong Ou
    View author publications

    You can also search for this author in PubMed Google Scholar

  2. Scot A Wolfe
    View author publications

    You can also search for this author in PubMed Google Scholar

  3. Michael H Brodsky
    View author publications

    You can also search for this author in PubMed Google Scholar

  4. Lihua Julie Zhu
    View author publications

    You can also search for this author in PubMed Google Scholar

Corresponding authors

Correspondence to Michael H Brodsky or Lihua Julie Zhu.

Ethics declarations

Competing interests

The authors declare no competing financial interests.

Supplementary information

Supplementary Text and Figures

Supplementary Figures 1–7 and Supplementary Note 1 (PDF 48697 kb)

Life Sciences Reporting Summary

Life Sciences Reporting Summary (PDF 67 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Ou, J., Wolfe, S., Brodsky, M. et al. motifStack for the analysis of transcription factor binding site evolution. Nat Methods 15, 8–9 (2018). https://doi.org/10.1038/nmeth.4555

Download citation

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1038/nmeth.4555

  • Springer Nature America, Inc.

This article is cited by

Search

Navigation