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Rendering RNA in 3D

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Integrating biochemical footprinting data with molecular dynamics yields more accurate RNA three-dimensional structure predictions.

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Figure 1: Prediction of RNA three-dimensional structure with footprinting and molecular dynamics.

References

  1. Ding, F., Lavender, C.A., Weeks, K.M. & Dokholyan, N.V. Nat. Methods 9, 603–608 (2012).

    Article  CAS  Google Scholar 

  2. Tullius, T.D. & Greenbaum, J.A. Curr. Opin. Chem. Biol. 9, 127–134 (2005).

    Article  CAS  Google Scholar 

  3. Sclavi, B., Sullivan, M., Chance, M.R., Brenowitz, M. & Woodson, S.A. Science 279, 1940–1943 (1998).

    Article  CAS  Google Scholar 

  4. Adilakshmi, T., Ramaswamy, P. & Woodson, S.A. J. Mol. Biol. 351, 508–519 (2005).

    Article  CAS  Google Scholar 

  5. Adilakshmi, T., Lease, R.A. & Woodson, S.A. Nucleic Acids Res. 34, e64 (2006).

    Article  Google Scholar 

  6. Russell, R. et al. J. Mol. Biol. 363, 531–544 (2006).

    Article  CAS  Google Scholar 

  7. Cruz, J.A. et al. RNA 18, 610–625 (2012).

    Article  CAS  Google Scholar 

  8. Lescoute, A., Leontis, N.B., Massire, C. & Westhof, E. Nucleic Acids Res. 33, 2395–2409 (2005).

    Article  CAS  Google Scholar 

  9. Cao, S. & Chen, S.J. J. Phys. Chem. B 115, 4216–4226 (2011).

    Article  CAS  Google Scholar 

  10. Das, R., Karanicolas, J. & Baker, D. Nat. Methods 7, 291–294 (2010).

    Article  CAS  Google Scholar 

  11. Parisien, M. & Major, F. Nature 452, 51–55 (2008).

    Article  CAS  Google Scholar 

  12. Jonikas, M.A., Radmer, R.J. & Altman, R.B. Bioinformatics 25, 3259–3266 (2009).

    Article  CAS  Google Scholar 

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Correspondence to Sarah A Woodson.

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Behrouzi, R., Woodson, S. Rendering RNA in 3D. Nat Methods 9, 552–553 (2012). https://doi.org/10.1038/nmeth.2045

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