The growing list of known microRNAs is only as useful as our ability to identify the mRNA targets they control. A new study stresses the role of messenger RNA structure in microRNA target recognition and suggests that binding of the RNA-induced silencing complex is largely controlled by the thermodynamics of RNA-RNA interactions.
References
Griffiths-Jones, S. Nucl. Acids Res. 32, D109–D111 (2004).
Berezikov, E. et al. Genome Res. 16, 1289–1298 (2006).
Sethupathy, P., Corda, B. & Hatziegeorgiou, A.G. RNA 12, 192–197 (2006).
Grün, D., Wang, Y.L., Langenberger, D., Gunsalus, K.C. & Rajewsky, N. PLoS Comput. Biol. 1, e13 (2005).
Lewis, B.P., Burge, C.B. & Bartel, D.P. Cell 120, 15–20 (2005).
Bentwich, I. et al. Nat. Genet. 37, 766–770 (2005).
Kertesz, M., Iovino, N., Unnerstall, U., Gaul, U. & Segal, E. Nat. Genet. 39, 1278–1284 (2007).
Rehmsmeier, M., Steffen, P., Höchsmann, M. & Giegerich, R. RNA 10, 1507–1517 (2004).
Mückstein, U. et al. Bioinformatics 22, 1177–1182 (2006).
Ding, Y. & Lawrence, C.E. Nucl. Acids Res. 29, 1034–1046 (2001).
Long, D. et al. Nat. Struct. Mol. Biol. 14, 287–294 (2007).
Robins, H., Li, Y. & Padgett, R.W. Proc. Natl. Acad. Sci. USA 102, 4006–4009 (2005).
Author information
Authors and Affiliations
Rights and permissions
About this article
Cite this article
Hofacker, I. How microRNAs choose their targets. Nat Genet 39, 1191–1192 (2007). https://doi.org/10.1038/ng1007-1191
Issue Date:
DOI: https://doi.org/10.1038/ng1007-1191
- Springer Nature America, Inc.
This article is cited by
-
The RNA–RNA base pairing potential of human Dicer and Ago2 proteins
Cellular and Molecular Life Sciences (2020)
-
microRNA-122 target sites in the hepatitis C virus RNA NS5B coding region and 3′ untranslated region: function in replication and influence of RNA secondary structure
Cellular and Molecular Life Sciences (2017)
-
An ensemble approach to the evolution of complex systems
Journal of Biosciences (2014)
-
miRNA–transcription factor interactions: a combinatorial regulation of gene expression
Molecular Genetics and Genomics (2013)
-
Widespread changes in protein synthesis induced by microRNAs
Nature (2008)