As the field of chemical biology matures, its practitioners are tackling ever more sophisticated biological problems. Chemical approaches, both synthetic and analytical, provide researchers with powerful new technologies to perturb, dissect and even reconstruct complex biological systems. Here we discuss the special challenges and opportunities confronted at the burgeoning interface of chemical and systems biology.
References
Crick, F.H., Barnett, L., Brenner, S. & Watts-Tobin, R.J. Nature 192, 1227–1232 (1961).
Blethrow, J.D., Glavy, J.S., Morgan, D.O. & Shokat, K.M. Proc. Natl. Acad. Sci. USA 105, 1442–1447 (2008).
Khidekel, N., Ficarro, S.B., Peters, E.C. & Hsieh-Wilson, L.C. Proc. Natl. Acad. Sci. USA 101, 13132–13137 (2004).
Dalhoff, C., Lukinavicius, G., Klimasauskas, S. & Weinhold, E. Nat. Chem. Biol. 2, 31–32 (2006).
Kolb, H.C., Finn, M.G. & Sharpless, K.B. Angew. Chem. Int. Ed. 40, 2004–2021 (2001).
Cravatt, B.F., Wright, A.T. & Kozarich, J.W. Annu. Rev. Biochem. 77, 383–414 (2008).
Greenbaum, D. et al. Mol. Cell. Proteomics 1, 60–68 (2002).
Jessani, N. et al. Nat. Methods 2, 691–697 (2005).
Weerapana, E., Simon, G.M. & Cravatt, B.F. Nat. Chem. Biol. 4, 405–407 (2008).
Lee, J., Yu, P., Xiao, X. & Kodadek, T. Mol. Biosyst. 4, 59–65 (2008).
Salisbury, C.M. & Cravatt, B.F. Proc. Natl. Acad. Sci. USA 104, 1171–1176 (2007).
Cohen, M.S., Hadjivassiliou, H. & Taunton, J. Nat. Chem. Biol. 3, 156–160 (2007).
Evans, M.J., Saghatelian, A., Sorensen, E.J. & Cravatt, B.F. Nat. Biotechnol. 23, 1303–1307 (2005).
Arastu-Kapur, S. et al. Nat. Chem. Biol. 4, 203–213 (2008).
Ahn, K. et al. Biochemistry 46, 13019–13030 (2007).
Robertson, J.G. Biochemistry 44, 5561–5571 (2005).
Knight, Z.A. & Shokat, K.M. Cell 128, 425–430 (2007).
Burdine, L. & Kodadek, T. Chem. Biol. 11, 593–597 (2004).
Weiss, W.A., Taylor, S.S. & Shokat, K.M. Nat. Chem. Biol. 3, 739–744 (2007).
Wong, S. et al. Proc. Natl. Acad. Sci. USA 101, 17456–17461 (2004).
Chen, S. et al. Proc. Natl. Acad. Sci. USA 103, 17266–17271 (2006).
Mahrus, S. et al. Cell 134, 866–876 (2008).
Dix, M.M., Simon, G.M. & Cravatt, B.F. Cell 134, 679–691 (2008).
Wells, J.A. & McClendon, C.L. Nature 450, 1001–1009 (2007).
Alexander, J.P. & Cravatt, B.F. Chem. Biol. 12, 1179–1187 (2005).
Author information
Authors and Affiliations
Rights and permissions
About this article
Cite this article
Simon, G., Cravatt, B. Challenges for the 'chemical-systems' biologist. Nat Chem Biol 4, 639–642 (2008). https://doi.org/10.1038/nchembio1108-639
Issue Date:
DOI: https://doi.org/10.1038/nchembio1108-639
- Springer Nature America, Inc.
This article is cited by
-
Characterizing ion mobility-mass spectrometry conformation space for the analysis of complex biological samples
Analytical and Bioanalytical Chemistry (2009)