Skip to main content
Log in

Chemical biology at the crossroads of molecular structure and mechanism

  • Commentary
  • Published:

From Nature Chemical Biology

View current issue Submit your manuscript

Chemical insight into biological function is the holy grail of structural biology. Small molecules are central players as building blocks, effectors and probes of macromolecular structure and function.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Figure 1: Osmium hexammine is a structural mimic of hexahydrated magnesium ion.
Figure 2: Crystal structure of the Haloarcula marismortui 50S ribosomal subunit5.
Figure 3: Approach to determining physiological activities of kinases by specific sensitization to chemical inhibitors.

Suphoj Chancheaw

References

  1. Schreiber, S.L. Nat. Chem. Biol. 1, 64–66 (2005).

    Article  CAS  Google Scholar 

  2. Lay, P.A., Magnuson, R.H. & Taube, H. Inorg. Chem. 28, 3001–3007 (1989).

    Article  CAS  Google Scholar 

  3. Cate, J.H. & Doudna, J.A. Structure 4, 1221–1229 (1996).

    Article  CAS  Google Scholar 

  4. Cate, J.H. et al. Science 273, 1678–1685 (1996).

    Article  CAS  Google Scholar 

  5. Ban, N., Nissen, P., Hansen, J., Moore, P.B. & Steitz, T.A. Science 289, 905–920 (2000).

    Article  CAS  Google Scholar 

  6. Wimberly, B.T. et al. Nature 407, 327–339 (2000).

    Article  CAS  Google Scholar 

  7. Cate, J.H., Yusupov, M.M., Yusupova, G.Z., Earnest, T.N. & Noller, H.F. Science 285, 2095–2104 (1999).

    Article  CAS  Google Scholar 

  8. Batey, R.T., Gilbert, S.D. & Montange, R.K. Nature 432, 411–415 (2004).

    Article  CAS  Google Scholar 

  9. Kazantsev, A.V. et al. Proc. Natl. Acad. Sci. USA 102, 13392–13397 (2005).

    Article  CAS  Google Scholar 

  10. Torres-Larios, A., Swinger, K.K., Krasilnikov, A.S., Pan, T. & Mondragon, A. Nature 437, 584–587 (2005).

    Article  CAS  Google Scholar 

  11. Draper, D.E., Grilley, D. & Soto, A.M. Annu. Rev. Biophys. Biomol. Struct. 34, 221–243 (2005).

    Article  CAS  Google Scholar 

  12. Rupert, P.B., Massey, A.P., Sigurdsson, S.T. & Ferre-D'Amare, A.R. Science 298, 1421–1424 (2002).

    Article  CAS  Google Scholar 

  13. Ferre-D'Amare, A.R., Zhou, K. & Doudna, J.A. Nature 395, 567–574 (1998).

    Article  CAS  Google Scholar 

  14. Perrotta, A.T., Shih, I. & Been, M.D. Science 286, 123–126 (1999).

    Article  CAS  Google Scholar 

  15. Shih, I.H. & Been, M.D. Proc. Natl. Acad. Sci. USA 98, 1489–1494 (2001).

    Article  CAS  Google Scholar 

  16. Das, S.R. & Piccirilli, J.A. Nat. Chem. Biol. 1, 45–52 (2005).

    Article  CAS  Google Scholar 

  17. Ke, A., Zhou, K., Ding, F., Cate, J.H. & Doudna, J.A. Nature 429, 201–205 (2004).

    Article  CAS  Google Scholar 

  18. Stahley, M.R. & Strobel, S.A. Science 309, 1587–1590 (2005).

    Article  CAS  Google Scholar 

  19. Chaulk, S.G. & MacMillan, A.M. Nucleic Acids Res. 26, 3173–3178 (1998).

    Article  CAS  Google Scholar 

  20. Sutcliffe, J.A. Curr. Opin. Microbiol. 8 534–542 (2005).

    Article  CAS  Google Scholar 

  21. Bishop, A.C. et al. Nature 407, 395–401 (2000).

    Article  CAS  Google Scholar 

  22. Bishop, A.C., Buzko, O. & Shokat, K.M. Trends Cell Biol. 11, 167–172 (2001).

    Article  CAS  Google Scholar 

  23. Nilsson, J. & Nissen, P. Curr. Opin. Struct. Biol. 15, 349–354 (2005).

    Article  CAS  Google Scholar 

  24. Gelperin, D., Horton, L., Beckman, J., Hensold, J. & Lemmon, S.K. RNA 7, 1268–1283 (2001).

    Article  CAS  Google Scholar 

  25. Wegierski, T., Billy, E., Nasr, F. & Filipowicz, W. RNA 7, 1254–1267 (2001).

    Article  CAS  Google Scholar 

  26. Karbstein, K. & Doudna, J.A. Mol. Cell (in the press).

Download references

Acknowledgements

I thank K. Berry and J. Cate for helpful discussions and comments on the manuscript.

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Doudna, J. Chemical biology at the crossroads of molecular structure and mechanism. Nat Chem Biol 1, 300–303 (2005). https://doi.org/10.1038/nchembio1105-300

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1038/nchembio1105-300

  • Springer Nature America, Inc.

This article is cited by

Navigation