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The PSI-MOD community standard for representation of protein modification data

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Acknowledgements

We gratefully acknowledge the work of David Horn of Agilent Technologies, Santa Clara, California, USA, and Detlev Suckau of Bruker Daltonik GmbH, Bremen, Germany, while working on development of the PSI-MS list of descriptive labels. We also acknowledge the contribution made by Ken Mitchelhill in preparing the DeltaMass list and by Len Packman in maintaining it for the Association of Biomolecular Resource Facilities. We thank Richard Cote of the European Bioinformatics Institute Proteomics Services Team for his work in developing the Ontology Lookup Service and the Ontology Browser for the PRIDE Project, and especially for developing the PSI-MOD mass search server. We thank Henning Hermjakob of the European Bioinformatics Institute for his leadership of the Proteomics Services Team and his contributions to the Proteomics Standards Initiative. The PSI meetings were supported by the Human Proteome Organization and by generous sponsorship from academic and commercial organizations. The collaborative development process has been facilitated by the infrastructure provided by Source Forge.

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Authors and Affiliations

  1. European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, Cambridge, UK

    Luisa Montecchi-Palazzi & John S Garavelli

  2. Beavis Informatics, Suite 706, 70 Arthur Street, Winnipeg, R3B 1G7, MB, Canada

    Ron Beavis

  3. Swiss Institute of Bioinformatics, 1 Rue Michel-Servet, CH-1211, Geneva, Switzerland

    Pierre-Alain Binz

  4. Geneva Bioinformatics (GeneBio) S.A., 25 Avenue de Champel, CH-1206, Geneva, Switzerland

    Pierre-Alain Binz

  5. Mass Spectrometry Facility, University of California, 600 16th Street, MC 2240, Genentech Hall, Suite N472A, San Francisco, 94143-0446, California, USA

    Robert J Chalkley

  6. Matrix Science, 8 Wyndham Place, W1H 1PP, London, UK

    John Cottrell & David Creasy

  7. Thermo Fisher Scientific, 355 River Oaks Parkway, San Jose, 95134, California, USA

    Jim Shofstahl

  8. Applied Biosystems|MDS Analytical Technology, 850 Lincoln Centre Dr., Foster City, 94404, California, USA

    Sean L Seymour

Authors
  1. Luisa Montecchi-Palazzi
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  2. Ron Beavis
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  3. Pierre-Alain Binz
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  4. Robert J Chalkley
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  5. John Cottrell
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  6. David Creasy
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  7. Jim Shofstahl
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  8. Sean L Seymour
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  9. John S Garavelli
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Corresponding author

Correspondence to John S Garavelli.

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Montecchi-Palazzi, L., Beavis, R., Binz, PA. et al. The PSI-MOD community standard for representation of protein modification data. Nat Biotechnol 26, 864–866 (2008). https://doi.org/10.1038/nbt0808-864

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