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Acknowledgements
We thank C. Panse for contributing a first XML parser to extract information from database search engine output files, E. Brunner and G. Hausmann for feedback on the manuscript and K. Basler, U. Grossniklaus, R. Aebersold, M. Hengartner and J. Jiricny for continued support of the Quantitative Model Organism Proteomics bioinformatics core group. E.Q. and C.H.A. are members of the Quantitative Model Organism Proteomics Initiative, which is supported by the University Research Priority Program Systems Biology/Functional Genomics of the University of Zurich.
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Supplementary Tables 1–3, Supplementary Fig. 1 (PDF 329 kb)
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Qeli, E., Ahrens, C. PeptideClassifier for protein inference and targeted quantitative proteomics. Nat Biotechnol 28, 647–650 (2010). https://doi.org/10.1038/nbt0710-647
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DOI: https://doi.org/10.1038/nbt0710-647
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