Adam-Blondon AF, Sevignac M, Bannerot H, Dron M: SCAR, RAPD and RFLP markers linked to a dominant gene (Are) conferring resistance to anthracnose in common bean. Theor Appl Genet 88: 865–870 (1994).
Ahn S, Anderson JA, Sorrells ME, Tanksley, SD: Homoeologous relationships of rice, wheat and maize chromosomes. Mol Gen Genet 241: 483–490 (1993).
Ahn S, Tanksley SD: Comparative linkage maps of the rice and maize genomes. Proc Natl Acad Sci USA 90: 7980–7984 (1993).
Ahn SN, Bollich CN, McClung AM, Tanksley SD: RFLP analysis of genomic regions associated with cooked-kernel elongation in rice. Theor Appl Genet 87: 27–32 (1993).
Akkaya MS, Bhagwat AA, Cregan PB: Length polymorphisms of simple sequence repeat DNA in soybean. Genetics 132: 1131–1139 (1992).
Arunachalam V, Chandrashekaran S: RFLP approach to breeding for quantitative traits in plants-a critique. J Genet 72: 73–83 (1994).
Becker J, Heun M: Barley microsatellites: allele variation and mapping. Plant Mol Biol 27: 835–845 (1995).
Becker J, Vos P, Kuiper M, Salamini F, Heun M: Combined mapping of AFLP and RFLP markers in barley. Mol Gen Genet 249: 65–73 (1995).
Bell CJ, Ecker JR: Assignment of 30 microsatellite loci to the linkage map of Arabidopsis. Genomics 19: 137–144 (1994).
Bent AF, Kunkel BN, Dahlbeck D, Brown KL, Schmidt R, Giraudat J, Leung J, Staskawicz BJ: RPS2 of Arabidopsis thaliana: a leucine-rich repeat class of plant disease resistance genes. Science 265: 1856–1860 (1994).
Blake T, Lybeck N, Hayes P: Good, bad and untested ideas in RFLP and QTL analysis. Plant Breed Abstr 61: 7 (1991).
Bonnema G, Homtelez J, Verkerk R, Zhang YQ, van Daelen R, van Kammen A, Zabel P: An improved method of partially digesting plant megabase DNA suitable for YAC cloning: application to the construction of a 5.5 genome equivalent YAC library of tomato. Plant J 9: 125–133 (1996).
Borovkova IG, Steffenson BJ, Jin Y, Rasmussen JB, Kilian A, Kleinhofs A, Rossnagel BG, Kao KN: Identification of molecular markers linked to the stem rust resistance gene rpg4 in barley. Phytopathology 85: 181–185 (1995).
Botstein B, White RL, Skolnick M, Davis RW: Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet 32: 314–331 (1980).
Broun P, Tanksley SD: Characterization and genetic mapping of simple repeat sequences in the tomato genome. Mol Gen Genet 250: 39–49 (1996).
Brown SM, Hopkins MS, Mitchell SE, Senior ML, Wang TY, Duncan RR, Gonzalez-Candelas F, Kresovich S: Multiple methods for the identification of polymorphic simple sequence repeats (SSRs) in sorghum [Sorghum bicolor (L.) Moench]. Theor Appl Genet 93: 190–198 (1996).
Brummer EC, Nickell AD, Wilcox JR, Shoemaker RC: Mapping the Fan locus controlling linolenic acid content in soybean oil. J Hered 86: 245–247 (1995).
Brunel D: A microsatellite marker in Helianthus annuus L. Plant Mol Biol 24: 397–400 (1994).
Caetano-Anolles G, Bassam BJ, Gresshoff PM: DNA amplification fingerprinting using very short arbitrary oligonucleotide primers. Bio Technology 9: 553–557 (1991).
Causse MA, Fulton TM, Cho YG, Ahn SN, Chunwongse J, Wu K, Xiao J, Yu Z, Ronald PC, Harrington SE, Second G, McCouch SR, Tanksley SD: Saturated molecular map of the rice genome based on an interspecific backcross population. Genetics 138: 1251–1274 (1994).
Cho YG, Eun MY, McCouch SR, Chae YA: The semidwarf gene, sd-1, of rice (Oryza sativa L.). II. Molecular mapping and marker-assisted selection. Theor Appl Genet 89: 54–59 (1994).
Choi S, Creelman RA, Mullet JE, Wing RA: Construction and characterization of a bacterial artificial chromosome library of Arabidopsis thaliana. Weeds World 2: 17–20 (1995).
Chungwongse J, Bunn TB, Crossman C, Jiang J, Tanksley SD: Chromosomal localization and molecular-marker tagging of the powdery mildew resistance gene (Lv) in tomato. Theor Appl Genet 89: 76–79 (1994).
Chunwongse J, Martin GB, Tanksley SD: Pre-germination genotypic screening using PCR amplification of half-seeds. Theor Appl Genet 86: 694–698 (1993).
Condit R, Hubbell SP: Abundance and DNA sequence of two-base repeat regions in tropical tree genomes. Genome 34: 66–71 (1991).
Creusot F, Fouilloux E, Dron M, Lafleuriel J, Picard G, Billault A, Paslier DL, Cohen D, Chaboute M-E, Durr A, Fleck J, Gigot C, Camilleri C, Bellini C, Caboche M, Bouchez D: The CIC library: a large insert YAC library for genome mapping in Arabidopsis thaliana. Plant J 8: 763–770 (1995).
Cui X, Wise RP, Schnable PS: The rf2 nuclear restorer gene of male-sterile T-cytoplasm maize. Science 272: 1334–1336 (1996).
Darvasi A, Weinreb A, Minke V, Weller JI, Soller M: Detecting marker-QTL linkage and estimating QTL gene effect and map location using a saturated genetic map. Genetics 134: 943–951 (1993).
de Vicente MC, Tanksley SD: QTL analysis of transgressive segregation in an interspecific tomato cross. Genetics 134: 585–596 (1993).
Devine TE, Weisemann JM, Matthews BF: Linkage of the Fr2 locus controlling soybean root fluorescence and four loci detected by RFLP markers. Theor Appl Genet 85: 921–925 (1993).
Devos KM, Atkinson MD, Chinoy CN, Francis HA, Harcourt RL, Koebner RMD, Liu CJ, Masojc P, Xie DX, Gale MD: Chromosomal rearrangements in the rye genome relative to that of wheat. Theor Appl Genet 85: 673–680 (1993).
Devos KM, Atkinson MD, Chinoy CN, Liu CJ, Gale MD: RFLP-based genetic map of the homoeologous group 3 chromosomes of wheat and rye. Theor Appl Genet 83: 931–939 (1992).
Devos KM, Bryan GJ, Collins AJ, Stephenson P, Gale MD: Application of two microsatellite sequences in wheat storage proteins as molecular markers. Theor Appl Genet 90: 247–252 (1995).
Devos KM, Gale MD: Extended genetic maps of the homoeologous group 3 chromosomes of wheat, rye and barley. Theor Appl Genet 85: 649–652 (1993).
Devos KM, Millan T, Gale MD: Comparative RFLP maps of the homoelogous group 2 chromosomes of wheat, rye and barley. Theor Appl Genet 85: 784–792 (1993).
Dickinson MJ, Jones DA, Jones JDG: Close linkage between the Cf-2/Cf-5 and Mi resistance loci in tomato. Mol Plant-Microbe Inter 6: 341–347 (1993).
Dietrich WF, Miller J, Steen R, Merchant MA, Damron-Boles D, Husain Z, Dredge R, Daly MJ, Ingalls KA, O'Connor TJ, Evans CA, DeAngelis MM, Levinson DM, Kruglyak L, Goodman N, Copeland NG, Jenkins NA, Hawkins TL, Stein L, Page DC, Lander ES: A comprehensive genetic map of the mouse genome. Nature 380: 149–152 (1996).
Dirlewanger EP, Isaac G, Ranade S, Belajouza M, Cousin R, de Vienne D: Restriction fragment length polymorphism analysis of loci associated with disease resistance genes and developmental traits in Pisum sativum L. Theor Appl Genet 88: 17–27 (1994).
Dixon MS, Jones DA, Keddie JS, Thomas CM, Harrison K, Jones JDG: The tomato Cf-2 disease resistance locus comprises two functional genes encoding leucine-rich repeat proteins. Cell 84: 451–459 (1996).
Dufour P, Grivet L, D'Hont A, Deu M, Trouche G, Glaszmann JC, Hamon P: Comparative genetic mapping between duplicated segments on maize chromosomes 3 and 8 and homoeologous regions in soghum and sugarcane. Theor Appl Genet 92: 1024–1030 (1996).
Dunford RP, Kurata N, Laurie DA, Money TA, Minobe Y, Moore G: Conservation of fine-scale DNA marker order in the genomes of rice and the Triticeae. Nucl Acids Res 23: 2724–2728 (1995).
Eastwood RF, Lagudah ES, Appels R: A directed search for DNA sequences tightly linked to cereal cyst nematode resistance genes in Triticum tauschii. Genome 37: 311–319 (1994).
Ecker JR: PFGE and YAC analysis of Arabidopsis genome. Methods 1: 186–194 (1990).
Edwards MD, Helentjaris T, Wright S, Stuber CW: Molecular-marker-facilitated investigations of quantitative trait loci in maize. Theor Appl Genet 83: 765–774 (1992).
Ellis THN: Restriction fragment length polymorphism markers in relation to quantitative characters. Theor Appl Genet 72: 1–2 (1986).
Ferreira ME, Rimmer SR, Williams PH, Osborn TC: Mapping loci controlling Brassica napus resistance to Leptosphaeria maculans under different screening conditions. Phytopathology 85: 213–217 (1995).
Ferreira ME, Williams PH, Osborn TC: Mapping of a locus controlling resistance to Albugo candida in Brassica napus using molecular markers. Phytopathology 85: 218–222 (1995)
Fukuoka S, Inoue T, Miyao A, Monna L, Zhong HS, Sasaki T, Minobe Y: Mapping of sequence-tagged sites in rice by single strand conformation polymorphism. DNA Res 1: 271–277 (1994).
Fukuta Y, Harushima Y, Yano M: Genetic analysis of shattering habit using molecular marker in rice (Oryza sativa L.). Paper presented at International Rice Genetics Symp 16–20 October 1995, IRRI, Manila, Philippines (in press).
Gebhardt C, Mugniery D, Ritter E, Salamini F, Bonnel E: Identification of RFLP markers closely linked to the H1 gene conferring resistance to Globodera rostochiensis in potato. Theor Appl Genet 85: 541–544 (1993).
Ghareyazie B, Huang N, Second G, Bennett J, Khush GS: Classification of rice germ plasm I. Analysis using ALP and PCR-based RFLP. Theor Appl Genet 91: 218–227 (1995).
Gimelfarb A, Lande R: Marker-assisted selection and marker-QTL associations in hybrid populations. Theor Appl Genet 91: 522–528 (1995).
Graner A, Tekauz A: RFLP mapping in barley of a dominant gene conferring resistance to scald (Rhynchosporium secalis). Theor Appl Genet 93: 421–425 (1996).
Grant MR, Godiard L, Straube E, Ashfield T, Lewald J, Sattler A, Innes RW, Dang JL: Structure of the Arabidopsis RPM1 gene enabling dual specificity disease resistance. Science. 269: 843–846 (1995).
Grill E, Somerville C: Construction and characterization of a yeast artificial chromosome library of Arabidopsis which is suitable for chromosome walking. Mol Gen Genet 226: 484–490 (1991).
Gu WK, Weeden NF, Yu J, Wallace DH: Large-scale, cost-effective screening of PCR products in marker-assisted selection applications. Theor Appl Genet 91: 465–470 (1995).
Hartl L, Weiss H, Stephan U, Zeller FJ, Jahoor A: Molecular identification of powdery mildew resistance genes in common wheat (Triticum aestivum L.). Theor Appl Genet 90: 601–606 (1995).
Hayes PM, Liu BH, Knapp SJ, Chen F, Jones B, Blake T, Franckowiak J, Rasmusson D, Sorrells M, Ullrich SE, Wesenberg D, Kleinhofs A: Quantitative trait locus effects and environmental interaction in a sample of North American barley germ plasm. Theor Appl Genet 87: 392–401 (1993).
Hearne CM, Ghosh S, Todd JA: Microsatellites for linkage analysis of genetic traits. Trends Genet 8: 288–294 (1992).
Hittalmani S, Foolad MR, Mew T, Rodriguez RL, Huang N: Development of a PCR-based marker to identify rice blast resistance gene, Pi-2(t), in a segregating population. Theor Appl Genet 91: 9–14 (1995).
Jacob HJ, Lindpaintner K, Lincoln SE, Kusumi K, Bunker RK, Mao Y-P, Ganten D, Dzau VJ, Lander ES: Genetic mapping of a gene causing hypertension in the stroke-prone spontaneously hypertensive rat. Cell 67: 213–224 (1991).
Jacobs JME, Herman JVC, Horsman K, Arens PFP, Verkerk-Bakker B, Jacobsen E, Pereira A, Stiekema WJ: Mapping of resistance to the potato cyst nematode Globodera rostochiensis from the wild potato species Solanum vernei. Mol Breed 2: 51–60 (1996).
Jarman AP, Wells RA: Hypervariable minisatellites: recombinators or innocent bystanders? Trends Genet 5: 367–371 (1989).
Johal GS, Briggs SP: Reductase activity encoded by the HM1 disease resistance gene in maize. Science 258: 985–987 (1992).
Johnson E, Miklas PN, Stavely JR, Martinez-Cruzado JC: Coupling-and repulsion-phase RAPDs for marker assisted selection of PI 181996 rust resistance in common bean. Theor Appl Genet 90: 659–664 (1995).
Jones DA, Thomas CM, Hammond-Kosack KE, Balint-Kurti PJ, Jones JDG: Isolation of the tomato Cf-9 gene for resistance to Cladosporium fulvum by transposon tagging. Science 266: 789–793 (1994).
Kijas JMH, Fowler JCS, Thomas MR: An evaluation of sequence tagged microsatellite site markers for genetic analysis within Citrus and related species. Genome 38: 349–355 (1995).
Kilian A, Kudrna DA, Kleinhofs A, Yano M, Kurata N, Steffenson B, Sasaki T: Rice-barley synteny and its application to saturation mapping of the barley Rpg1 region. Nucl Acids Res 23: 2729–2733 (1995).
Kilian A, Steffenson BJ, Saghai Maroof MA, Kleinhofs A: RFLP markers linked to the durable stem rust resistance gene Rpg1 in barley. Mol Plant-Microbe Interact 7: 298–301 (1994).
Kinoshita T: Report of committee on gene symbolization, nomenclature and linkage group. Rice Genet Newl 12: 9–153 (1995).
Klein-Lankhorst R, Rietveld P, Machiels B, Verkerk R, Weide R, Gebhardt C, Kornneef M, Zabel P: RFLP markers linked to the root knot nematode resistance gene Mi in tomato. Theor Appl Genet 81: 661–667 (1991).
Knapp SJ, Bridges WC, Birkes D: Mapping quantitative trait loci using molecular-marker linkage maps. Theor Appl Genet 79: 583–592 (1990).
Knott SA, Haley CS: Aspects of maximum-likelihood methods for the mapping of quantitative traits in line crosses. Genet Res 60: 139–151 (1992)
Kurata N, Moore G, Nagamura Y, Foote T, Yano M, Minobe Y, Gale M: Conservation of genome structure between rice and wheat. Bio/technology 12: 276–278 (1994).
Kurata N, Nagamura Y, Yamamoto K, Harushima Y, Sue N, Wu J, Antonio BA, Shomura A, Shimizu T, Lin S-Y, Inoue T, Fukuda A, Shimano T, Kuboki Y, Toyama T, Miyamoto Y, Kirihara T, Hayasaka K, Miyao A, Monna L, Zhong HS, Tamura Y, Wang Z-X, Momma T, Umehara Y, Yano M, Sasaki T, Minobe Y: A 300 kilobase interval genetic map of rice including 883 expressed sequences. Nature Genet 8: 365–372 (1994).
Landau-Ellis D, Angermuller S, Shoemaker R, Gresshoff PM: The genetic locus controlling supernodulation in soybean (Glycine max L) co-segregates tightly with a cloned molecular marker. Mol Gen Genet 228: 221–226 (1991).
Lander ES, Botstein D: Mapping mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121: 185–199 (1989).
Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L: MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1: 174–181 (1987).
Langridge U, Schwall M, Langridge P: Squashes of plant tissue as substrate for PCR. Nucl Acids Res 19: 6954 (1991).
Laurie DA, Pratchett N, Bezant JH, Snape JW: RFLP mapping of five major genes and eight quantitative trait loci controlling flowering time in a winter × spring barley (Hordeum vulgare L.) cross. Genome 38: 575–585 (1995).
Lawrence GJ, Finnegan EJ, Ayliffe MA, Ellis JG: The L6 gene for flax rust resistance is related to the Arabidopsis bacterial resistance gene RPS2 and the tobacco viral resistance gene N. Plant Cell 7: 1195–1206 (1995).
Lee I, Aukerman MJ, Gore SL, Lohman KN, Michaels SD, Weaver LM, John MC, Feldmann KA, Amasino RM: Isolation of LUMINIDEPENDENS: a gene involved in the control of flowering time in Arabidopsis. Plant Cell 6: 75–83 (1994).
Li Z, Paterson AH, Pinson SRM, Park WD, Stansel JW: Mapping of QTL and quantitative modifying factors (QTMFs) in rice. Paper presented at the International Rice Genetics Symposium 16–20 October 1995. IRRI, Manila, Philippines (in press).
Li Z, Pinson SRM, Marchetti MA, Stansel JW, Park WD: Characterization of quantitative trait loci (QTLs) in cultivated rice to field resistance to sheath blight (Rhizoctonia solani). Theor Appl Genet 91: 382–388 (1995).
Li Z, Pinson SRM, Stansel JW, Park WD: Identification of quantitative trait loci (QTLs) for heading date and plant height in cultivated rice (Oryza sativa L.). Theor Appl Genet 91: 374–381 (1995).
Lin J-J, Kuo J, Ma J, Saunders JA, Beard HS, MacDonald MH, Kenworthy W, Ude GN, Matthews BL: Identification of molecular markers in soybean: comparing RFLP, RAPD and AFLP DNA mapping techniques. Plant Mol Biol Rep 14: 156–169 (1996).
Litt M, Luty JA: A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene. Am J Hum Genet 44: 397–401 (1989).
Lyamichev V, Brow MAD, Dahlberg JE: Structure-specific endonucleolytic cleavage of nucleic acids by eubacterial DNA polymerases. Science 260: 778–783 (1993).
Martin GB, Brommonschenkel SH, Chunwongse J, Frary A, Ganal MW, Spivey R, Wu T, Earle ED, Tanksley SD: Map-based cloning of a protein kinase gene conferring disease resistance in tomato. Science 262: 1432–1436 (1993).
Martin GB, Frary A, Wu T, Brommonschenkel S, Chunwongse J, Earle ED, Tanksley SD: A member of the tomato Pto gene family confers sensitivity to fenthion resulting in rapid cell death. Plant Cell 6: 1543–1552 (1994).
Martin GB, Ganal MW, Tanksley SD: Construction of a yeast artificial chromosome library of tomato and identification of cloned segments linked to two disease resistance loci. Mol Gen Genet 233: 25–32 (1992).
Martin GB, Williams JGK, Tanksley SD: Rapid identification of markers linked to a Pseudomonas resistance gene in tomato by using random primers and near isogenic lines. Proc Natl Acad Sci USA 88: 2336–2340 (1991).
Maughan PJ, Saghai Maroof MA, Buss GR: Mirosatellite and amplified sequence length polymorphisms in cultivated and wild soybean. Genome 38: 715–723 (1995).
MeKsem K, Leister D, Peleman J, Zabeau M, Salamini F, Gebhardt C: A high-resolution map of the vicinity of the R1 locus on chromosome V of potato based on RFLP and AFLP markers. Mol Gen Genet 249: 74–81 (1995).
Messmer MM, Melchinger AE, Boppenmaier J, Brunklaus-Jung E, Hermann RG: Relationships among early European maize inbreds. I. Genetic diversity among flint and dent lines revealed by RFLPs. Crop Sci 32: 1301–1309 (1992).
Michelmore RW, Paran I, Kesseli RV: Identification of markers linked to disease resistance genes by bulked-segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations. Proc Natl Acad Sci USA 88: 9828–9832 (1991).
Mindrinos M, Katagiri F, Yu G-L, Ausubel FM: The A. thaliana disease resistance gene RPS2 encodes a protein containing a nucleotide-binding site and leucine-rich repeats. Cell 78: 1089–1099 (1994).
Mohan M, Nair S, Bentur JS, Prasada Rao U, Bennett J: RFLP and RAPD mapping of the rice Gm2 gene that confers resistance to biotype 1 of gall midge (Orseolia oryzae). Theor Appl Genet 87: 782–788 (1994).
Moore G, Devos KM, Wang Z, Gale MD: Grasses, line up and form a circle. Curr Biol 5: 737–739 (1995).
Moore G, Foote T, Helentjaris T, Devos K, Kurata N, Gale M: Was there a single ancestral cereal chromosome? Trends Genet 11: 81–82 (1995).
Morgante M, Olivieri AM: PCR-amplified microsatellites as markers in plant genetics. Plant J 3: 175–182 (1993).
Morgante M, Rafalski A, Biddle P, Tingey S, Olivieri AM: Genetic mapping and variability of seven soybean simple sequence rapeat loci. Genome 37: 763–769 (1994).
Mumm RH, Dudley JW: A classification of 148 US maize inbreds. I. Cluster analysis based on RFLPs. Crop Sci 34: 842–851 (1994).
Nair S, Bentur JS, Prasada Rao U, Mohan M: DNA markers tightly linked to a gall midge resistance gene (Gm2) are potentially useful for marker-aided selection in rice breeding. Theor Appl Genet 91: 68–73 (1995).
Nair S, Kumar A, Srivastava MN, Mohan M: PCR-based DNA markers linked to a gall midge resistance gene, Gm4t, has potential for marker aided selection in rice. Theor Appl Genet 92: 660–665 (1996).
Nair S, Prasada Rao U, Bennett J, Mohan M: Detection of an unusually high heterozygous locus in recombinant inbred lines of rice and its possible involvement in heterosis. Theor Appl Genet 91: 978–986 (1995).
Naqvi NI, Bonman JM, Mackill DJ, Nelson RJ, Chattoo BB: Identification of RAPD markers linked to a major blast resistance gene in rice. Mol Breed 1: 341–348 (1995).
Nguyen HT, Babu CR, Pathan MS, Shashidhar HE, Zheng HG, Blum A: Molecular mapping of draught resistance traits in rice. Paper presented at the International Rice Genetics Symposium 16–20 October 1995, IRRI, Manila, Philippines (in press).
Nienhuis J, Helentjaris T, Slocum M, Ruggero B, Schaefer A: Restriction fragment length polymorphism analysis of loci associated with insect resistance in tomato. Crop Sci 27: 797–803 (1987).
Niewohner J, Salamini F, Gebhardt C: Development of PCR assays diagnostic for RFLP marker alleles closely linked to alleles Gro1 and H1, conferring resistance to the root cyst nematode Globodera rostochiensis in potato. Mol Breed 1: 65–78 (1995).
Oh BJ, Frederiksen RA, Magill CW: Identification of molecular markers linked to head smut resistance gene (Shs) in sorghum by RFLP and RAPD analyses. Phytopathology 84: 830–833 (1994).
Orita M, Iwahana H, Kanazawa H, Hayashi K, Sekiya T: Detection of polymorphisms of human DNA by gel electrophresis as single-strand conformation polymorphisms. Proc Natl Acad Sci USA 86: 2766–2770 (1989).
Osborn TC, Alexander DC, Fobes JF: Identification of restriction fragment length polymorphisms linked to genes controlling soluble solids content in tomato fruit. Theor Appl Genet 73: 350–356 (1987).
Ozias-Akins P, Lubbers EL, Hanna WW, McNay JW: Transmission of the apomictic mode of reproduction in Pennisetum: co-inheritance of the trait and molecular markers. Theor Appl Genet 85: 632–638 (1993).
Pan A, Hayes PM, Chen F, Chen THH, Blake T, Wright S, Karsai I, Bedo Z: Genetic analysis of the components of winterhardiness in barley (Hordeum vulgare L.). Theor Appl Genet 89: 900–910 (1994).
Paran I, Michelmore RW: Development of reliable PCR-based markers linked to downy mildew resistance genes in lettuce. Theor Appl Genet 85: 985–993 (1993).
Paterson AH, De Verna JW, Lanini B, Tanksley SD: Fine mapping of quantitative trait loci using a selected overlapping recombinant chromosome in an interspecies cross of tomato. Genetics 124: 735–724 (1990).
Paterson AH, Lander ES, Hewitt JD, Peterson SE, Lincoln SE, Tanksley SD: Resolution of quantitative traits into Mendelian factors by using a complete linkage map of restriction fragment length polymorphisms. Nature 335: 721–726 (1988).
Paterson AH, Lin Y-R, Li Z, Schertz KF, Doebley JF, Pinson SRM, Liu S-C, Stansel JW, Irvine JE: Convergent domestication of cereal crops by independent mutations at corresponding genetic loci. Science 269: 1714–1718 (1995).
Paterson AH, Tanksley SD, Sorrells ME: DNA markers in plant improvement. Adv Agron 46: 39–90 (1991).
Penner GA, Bush A, Wise R, Kim W, Domier L, Kasha K, Larochi A, Sooles G, Moluav SJ, Fedak G: Reproducibility of random amplified polymorphic DNA (RAPD) analysis among laboratories. PCR Meth Appl 2: 341–345 (1993).
Penner GA, Stebbing JA, Legge B: Conversion of an RFLP marker for the barley stem rust resistance gene Rpg1 to a specific PCR-amplifiable polymorphism. Mol Breed 1: 349–354 (1995).
Pereira MG, Lee M, Bramel-Cox P, Woodman W, Doebley J, Whitkus R: Construction of an RFLP map in sorghum and comparative mapping in maize. Genome 37: 236–243 (1994).
Pineda O, Bonierbale MW, Plaisted RL, Brodie BB, Tanksley SD: Identification of RFLP markers linked to the H1 gene conferring resistance to the potato cyst nematode Globodera rostochiensis. Genome 36: 152–156 (1993).
Plaschke J, Ganal MW, Roder MS: Detection of genetic diversity in closely related bread wheat using microsatellite markers. Theor Appl Genet 91: 1001–1007 (1995).
Powell W, Machray GC, Provan J: Polymorphism revealed by simple sequence repeats. Trends Plant Sci 1: 215–222 (1996).
Putterill J, Robson F, Lee K, Simon R, Coupland G: The CONSTANS gene of Arabidopsis promotes flowering and encodes a protein showing similarities to zinc finger transcription factor. Cell 80: 847–857 (1995).
Ragot M, Hoisington DA: Molecular markers for plant breeding: comparison of RFLP and RAPD genotyping costs. Theor Appl Genet 86: 975–984 (1993).
Reddy AR, Scheffler B, Madhuri G, Srivastava MN, Kumar A, Sathyanarayanan PV, Nair S, Mohan M: Chalcone synthase in rice (Oryza sativa L.): detection of the CHS protein in seedlings and molecular mapping of the chs locus. Plant Mol Biol (in press).
Roder MS, Plaschke J, Konig SU, Borner A, Sorrells ME, Tanksley SD, Ganal MW: Abundance, variability and chromosome location of microsatellites in wheat. Mol Gen Genet 246: 327–333 (1995).
Ronald PC, Albano B, Tabien R, Abenes L, Wu KS, McCouch S, Tanksley SD: Genetic and physical analysis of the rice bacterial blight disease resistance locus, Xa21. Mol Gen Genet 236: 113–120 (1992).
Rongwen J, Akkaya MS, Bhagwat AA, Lavi U, Cregan PB: The use of microsatellite DNA markers for soybean genotype identification. Theor Appl Genet 90: 43–48 (1995).
Saghai Maroof MA, Biyashev RM, Yang GP, Zhang Q, Allard RW: Extraordinarily polymorphic microsatellite DNA in barley: Species diversity, chromosomal locations and population dynamics. Proc Natl Acad Sci USA 91: 5466–5470 (1994).
Saghai Maroof MA, Tang GP, Biyashev RM, Maughan PJ, Zhang Q: Analysis of the barley and rice genomes by comparative RFLP linkage mapping. Theor Appl Genet 92: 541–551 (1996).
Salentijn EMJ, Arens-de Reuver MJB, Lange W, de Bock TSM, Stiekema WJ, Klein-Lankhorst RM: Isolation and characterization of RAPD-based markers linked to the beet cyst nematode resistance locus (Hs1
-1) on chromosome 1 of B. patellaris. Theor Appl Genet 90: 885–891 (1995).
Salmeron JM, Oldroyd EDG, Rommens CMT, Scoofield SR, Kim H-S, Lavelle DT, Dahlbeck D, Staskawicz BJ: Tomato Prf is a member of the leucine-rich repeat class of plant disease resistance genes and lies embedded within the Pto kinase gene cluster. Cell 86: 123–133 (1996).
Sarfatti M, Abu-Abied M, Katan J, Zamir D: RFLP mapping of I1, a new locus in tomato conferring resistance against Fusarium oxysporum f. sp. lycopersici race 1. Theor Appl Genet 82: 22–26 (1991).
Sarfatti M, Katan J, Fluhr R, Zamir D: An RFLP marker in tomato linked to the Fusarium oxysporum resistance gene I2. Theor Appl Genet 78: 755–759 (1989).
Sarkar G, Cassady J, Bottema CDK, Sommer SS: Characterization of polymerase chain reaction amplification of specific alleles. Anal Biochem 186: 64–68 (1990).
Schachermayr G, Siedler H, Gale MD, Winzeler H, Winzeler M, Keller B: Identification and localization of molecular markers linked to the Lr9 leaf rust resistance of wheat. Theor Appl Genet 88: 110–115 (1994).
Schachermayr GM, Messmer MM, Feuillet C, Winzeler H, Winzeler M, Keller B: Identification of molecular markers linked to the Agropyron elongatum-derived leaf rust gene Lr24 in wheat. Theor Appl Genet 90: 982–990 (1995).
Schmidt R, West J, Cnops G, Love K, Balestrazzi A, Dean C: Detailed description of four YAC contigs representing 17 Mb of chromosome 4 of Arabidopsis thaliana ecotype Columbia. Plant J 9: 755–765 (1996).
Schmidt R, West J, Love K, Lenehan Z, Lister C, Thompson H, Bouchez D, Dean C: Physical map and organization of Arabidopsis thaliana chromosome 4. Science 270: 480–483 (1995).
Senior ML, Heun M: Mapping maize microsatellites and polymerase chain reaction confirmation of the targeted repeats using a CT primer. Genome 36: 884–889 (1993).
Simcox KD, Bennetzen JL: The use of molecular markers to study Setosphaeria turcica resistance in maize. Phytopathology 83: 1326–1330 (1993).
Skorupska HT, Choi IS, Rao-Arelli AP, Bridges WC: Resistance to soybean cyst nematode and molecular polymorphism in various sources of Peking soybean. Euphytica 75: 63–70 (1994).
Smith DN, Devey ME: Occurrence and inheritance of microsatellites in Pinus radiata. Genome 37: 977–983 (1994).
Song W-Y, Wang G-L, Chen L-L, Kim H-S, Pi L-Y, Holsten T, Gardner J, Wang B, Zhai W-X, Zhu L-H, Fauquet C, Ronald P: A receptor kinase-like protein encoded by the rice disease resistance gene, Xa21. Science 270: 1804–1806 (1995).
Stuber CW, Lincoln SE, Wolff DW, Helentjaris T, Lander ES: Identification of genetic factors contributing to heterosis in a hybrid from elite maize inbred lines using molecular markers. Genetics 132: 823–839 (1992).
Tanksley SD, Ganal MW, Martin GB: Chromosomal landing: a paradigm for map-based gene cloning in plants with large genomes. Trends Genet 11: 63–68 (1995).
Tanksley SD, Hewitt J: Use of molecular markers in breeding for soluble solids content in tomato-a re-examination. Theor Appl Genet 75: 811–823 (1988).
Taramino G, Tingey S: Simple sequence repeats for germplasm analysis and mapping in maize. Genome 39: 277–287 (1996).
Terauchi R, Konuma A: Microsatellite polymorphism in Dioscorea tokoro, a wild yam species. Genome 37: 794–801 (1994).
Thomas MR, Scott NS: Microsatellite repeats in grapevine reveal DNA polymorphisms when analysed as sequencetagged sites (STSs). Theor Appl Genet 86: 985–990 (1993).
Timmerman GM, Frew TJ, Weeden NF, Miller AL, Goulden DS: Linkage mapping of er, a recessive Pisum sativum gene for resistance to powdery mildew fungus (Erysiphe pisi). Theor Appl Genet 88: 1050–1055 (1994).
Umehara Y, Inagaki A, Tanoue H, Yasukochi Y, Nagamura Y, Saji S, Otsuki Y, Fujimura T, Kurata N, Minobe Y: Construction and characterization of a rice YAC library for physical mapping. Mol Breed 1: 79–89 (1995).
Umehara Y, Tanoue H, Kurata N, Ashikawa I, Minobe Y, Sasaki T: An ordered yeast artificial chromosome library covering over half of rice chromosome 6. Genome Res (in press).
Van Deynze AE, Dubcovsky J, Gill KS, Nelson JC, Sorrells ME, Dvorak J, Gill BS, Lagudah ES, McCouch SR, Appels R: Molecular-genetic maps for group 1 chromosomes of Triticeae species and their relation to chromosomes in rice and oat. Genome 38: 45–59 (1995).
Van Deynze AE, Nelson JC, O'Donoughue LS, Ahn SN, Siripoonwiwat W, Harrington SE, Yglesias ES, Braga DP, McCouch SR, Sorrells ME: Comparative mapping in grasses. Oat relationships. Mol Gen Genet 249: 349–356 (1995).
Van Deynze AE, Nelson JC, Yglesias ES, Harrington SE, Braga DP, McCouch SR, Sorrells ME: Comparative mapping in grasses. Wheat relationships. Mol Gen Genet 248: 744–754 (1995).
van der Beek JG, Pet G, Lindhout P: Resistance to powdery mildew (Oidium lycopersicum) in Lycopersicon hirsutum is controlled by an incompletely-dominant gene O1–1 on chromosome 6. Theor Appl Genet 89: 467–473 (1994).
Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M: AFLP: a new technique for DNA fingerprinting. Nucl Acids Res 23: 4407–4414 (1995).
Wang G, Mackill DJ, Bonman JM, McCouch SR, Champoux MC, Nelson RJ: RFLP mapping of genes conferring complete and partial resistance to blast in a durably resistant rice cultivar. Genetics 136: 1421–1434 (1994).
Wang Z, Weber JL, Zhong G, Tanksley SD: Survey of plant short tandem DNA repeats. Theor Appl Genet 88: 1–6 (1994).
Ward ER, Jen GC: Isolation of single-copy-sequence clones from a yeast artificial chromosome library of randomly sheared Arabidopsis thaliana DNA. Plant Mol Biol 14: 561–568 (1990).
Weber D, Helentjaris T: Mapping RFLP loci in maize using B-A translocations. Genetics 121: 583–590 (1989).
Weber JL, May PE: Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am J Hum Genet 44: 388–396 (1989).
Weeden NF, Muehlbauer FJ, Ladizinsky G: Extensive conservation of linkage relationships between pea and lentil genetic maps. J Hered 83: 123–129 (1992).
Welsh J, McClelland M: Fingerprinting genomes using PCR with arbitrary primers. Nucl Acids Res 8: 7213–7218 (1990).
Whitham S, Dinesh-Kumar SP, Choi D, Hehl R, Corr C, Baker B: The product of the tobacco mosaic virus resistance gene N: similarity to toll and the interleukin-1 receptor. Cell 78: 1101–1115 (1994).
Williams JGK, Kubelik AR, Livak KJ, Rafalski JA, Tingey SV: DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucl Acids Res 18: 6531–6535 (1990).
Williams MNV, Pande N, Nair S, Mohan M, Bennett J: Restriction fragment length polymorphism analysis of polymerase chain reaction products amplified from mapped loci of rice (Oryza sativa L.) genomic DNA. Theor Appl Genet 82: 489–498 (1991).
Williamson VM, Ho J-Y, Wu FF, Miller N, Kaloshian I: A PCR-based marker tightly linked to the nematode resistance gene, Mi, in tomato. Theor Appl Genet 87: 757–763 (1994).
Wing RA, Zhang HB, Tanksley SD: Map-based cloning in crop plants. Tomato as amodel system. I. Genetic and physical mapping of jointless. Mol Gen Genet 242: 681–688 (1994).
Woo S-S, Jiang J, Gill BS, Paterson AH, Wing RA: Construction and characterization of a bacterial artificial chromosome library of Sorghum bicolor. Nucl Acids Res 22: 4922–4931 (1994).
Wu K-S, Tanksley SD: Abundance, polymorphism and genetic mapping of microsatellite in rice. Mol Gen Genet 241: 225–235 (1993).
Xiao J, Li J, Yuan L, Tanksley SD: Dominance is the major genetic basis of heterosis in rice as revealed by QTL analysis using molecular markers. Genetics 140: 745–754 (1995).
Yadav RS, Courtois B, Huang N: Mapping genes controlling root morphology in a double haploid population of indica x japonica cross of rice. Paper presented at the International Rice Genetics Symposium, 16–20 October 1995. IRRI, Manila, Philippines (in press).
Yang GP, Saghai Maroof MA, Xu CG, Zhang Q, Biyashev RM: Comparative analysis ofmicrosatelliteDNApolymorphism in landraces and cultivars of rice. Mol Gen Genet 245: 187–194 (1994).
Yano M, Harushima Y, Kuboki Y, Lin SY, Nagamura Y, Kurata N, Sasaki T: QTL mapping as an aid to tagging of genes conferring heading date in rice. Paper presented at the International Rice Genetics Symposium 16–20 October 1995. IRRI, Manila, Philippines (in press).
Yano M, Nagamura Y, Kurata N, Sasaki T: Genetic linkage map of DNAmarkers and its application to genetic analysis in rice. Gamma Field Symposia (Institute ofRadiation Breeding, NIAR/MAFF, Japan) 34 (in press).
Yoshimura S, Umehara Y, Kurata N, Nagamura Y, Sasaki T, Minobe Y, Iwata N: Identification of a YAC clone carrying the Xa-1 allele, a bacterial blight resistance gene in rice. Theor Appl Genet 93: 117–122 (1996).
Yoshimura S, Yoshimura A, Iwata N, McCouch S, Abenes ML, Baraoidan MR, Mew T, Nelson RJ: Tagging and combining bacterial blight resistance genes in rice using RAPD and RFLP markers. Mol Breed 1: 375–387 (1995).
Young N, Zamir D, Ganal MW, Tanksley SD: Use of isogenic lines and simultaneous probing to identify markers tightly linked to the Tm-2a gene in tomato. Genetics 120: 579–585 (1988).
Young ND, Danesh D, Menancio-Hautea D, Kumar L: Mapping oligogenic resistance to powdery mildew in mungbean with RFLPs. Theor Appl Genet 87: 243–249 (1993).
Young ND, Kumar L, Menancio-Hautea D, Danesh D, Talekar NS, Shanmugasundarum S, Kim DH: RFLP mapping of major bruchid resistance gene in mungbean (Vigna radiata L., Wilczek). Theor Appl Genet 84: 839–844 (1992).
Young ND, Tanksley SD: RFLP analysis of the size of chromosomal segments retained around the Tm-2 locus of tomato during backcross breeding. Theor Appl Genet 77: 353–359 (1989).
Yu K, Pauls KP: Identification of a RAPD marker associated with somatic embryogenesis in alfalfa. Plant Mol Biol 22: 269–277 (1993).
Yu ZH, Mackill DJ, Bonman JM, Tanksley SD: Tagging genes for blast resistance in rice via linkage to RFLP markers. Theor Appl Genet 81: 471–476 (1991).
Yu YG, Saghai Maroof MA, Buss GR, Maughan PJ, Tolin SA: RFLP and microsatellite mapping of a gene for soybean mosaic virus resistance. Phytopathology 84: 60–64 (1994).
Zachgo EA, Wang ML, Dewdney J, Bouchez D, Camilleri C, Belmonte S, Huang L, Dolan M, Goodman HM: A physical map of chromosome 2 of Arabidopsis thaliana. Genome Res 6: 19–25 (1996).
Zaitlin D, DeMars S, Ma Y: Linkage of rhm, a recessive gene for resistance to southern corn leaf blight to RFLP marker loci in maize (Zea mays) seedlings. Genome 36: 555–564 (1993).
Zhang G, Angeles ER, Abenes MLP, Khush GS, Huang N: Molecular mapping of a bacterial blight resistance gene on chromosome 8 in rice. Rice Genet Newl 11: 142–144 (1994).
Zhang H-B, Choi S, Woo S-S, Li Z, Wing RA: Construction and characterization of two rice bacterial artificial chromosome libraries from the parents of a permanent recombinant inbred mapping population. Mol Breed 2: 11–24 (1996).
Zhang Q, Gao YJ, Saghai Maroof MA, Yang SH, Li JX: Molecular divergence and hybrid performance in rice. Mol Breed 1: 133–142 (1995).
Zhang Q, Shen BZ, Dai XK, Mei MH, Saghai Maroof MA, Li ZB: Using bulked extremes and recessive class to map genes for photoperiod-sensitive genic male sterility in rice. Proc Natl Acad Sci USA 91: 8675–8679 (1994).
Zhou J, Loh Y-T, Bressan RY, Martin GB: The tomato gene Pti1 encodes a serine/threonine kinase that is phosphorylated by Pto and is involved in the hypersensitive response. Cell 83: 925–935 (1995).
Zhu L, Lu C, Li P, Shen L, He P, Chen Y: Using DH populations of rice for QTL mapping and geographical genotyping. Paper presented at the International Rice Genetics Symposium 16–20 October 1995. IRRI, Manila, Philippines (in press).
Zietkiewicz E, Rafalski A, Labuda D: Genomic fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics 20: 176–183 (1994).