Skip to main content
Log in

Toward an Automated Identification of Anastrepha Fruit Flies in the fraterculus group (Diptera, Tephritidae)

  • Systematics, Morphology and Physiology
  • Published:
Neotropical Entomology Aims and scope Submit manuscript

Abstract

In this study, we assess image analysis techniques as automatic identifiers of three Anastrepha species of quarantine importance, Anastrepha fraterculus (Wiedemann), Anastrepha obliqua (Macquart), and Anastrepha sororcula Zucchi, based on wing and aculeus images. The right wing and aculeus of 100 individuals of each species were mounted on microscope slides, and images were captured with a stereomicroscope and light microscope. For wing image analysis, we used the color descriptor Local Color Histogram; for aculei, we used the contour descriptor Edge Orientation Autocorrelogram. A Support Vector Machine classifier was used in the final stage of wing and aculeus classification. Very accurate species identifications were obtained based on wing and aculeus images, with average accuracies of 94 and 95%, respectively. These results are comparable to previous identification results based on morphometric techniques and to the results achieved by experienced entomologists. Wing and aculeus images produced equally accurate classifications, greatly facilitating the identification of these species. The proposed technique is therefore a promising option for separating these three closely related species in the fraterculus group.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig 1
Fig 2

Similar content being viewed by others

References

  • Araujo EL, Nascimento FM, Zucchi RA (1998) Utilização de análise discriminante em estudos taxonômicos de moscas-das-frutas do gênero Anastrepha Schiner, 1868 (Diptera, Tephritidae). Sci Agric 55:105–110

    Article  Google Scholar 

  • Arbuckle T, Schrder S, Steinhage V, Wittmann D (2001) Biodiversity informatics in action: identification and monitoring of bee species using ABIS. International Symposium for Environmental Protection 425–430

  • Arribas JI, Sánchez-Ferrero GV, Ruiz-Ruiz G, Gómez-Gil J (2011) Leaf classification in sunflower crops by computer vision and neural networks. Comput Electron Agric 78:9–18

    Article  Google Scholar 

  • Baylac M, Villemant C, Simbolotti G (2003) Combining geometric morphometrics with pattern recognition for the investigation of species complexes. Biol J Linn Soc 80:89–98

    Article  Google Scholar 

  • Bomfim ZV, Lima KM, Silva JG, Zucchi RA (2011) A morphometric and molecular study of Anastrepha pickeli Lima (Diptera: Tephritidae). Neotrop Entomol 40:587–594

    CAS  PubMed  Google Scholar 

  • Bortolus A. (2008) Error cascades in the biological science: the unwanted consequences of using bad taxanomy in ecology. AmBio 37:114–118

  • Breisman L (1996) Bagging predictors. Mach Learn 24:123–140

    Google Scholar 

  • Faria FA, Perre P, Zucchi RA, Jorge LR, Lewinsohn TM, Rocha A, Torres RS (2014) Automatic identification of fruit flies (Diptera: Tephritidae). J Vis Commun Image Represent 25:1516–1527

    Article  Google Scholar 

  • Gaston KJ, O’Neil MAL (2004) Automated species identification: why not? Philos Trans R Soc B 359:655–667

    Article  Google Scholar 

  • Godfray HCJ (2002) Challenge for taxonomy: the discipline will have to reinvent itself if it is to survive and flourish. Nature 417:17–19

    Article  CAS  PubMed  Google Scholar 

  • Hall M, Frank E, Holmes G, Pfahringer B, Reutemann P, Witten IH (2009) The WEKA data mining software: an update. SIGKDD Explor 11:10–18

    Article  Google Scholar 

  • Hebert PDN, Gregory TR (2005) The promise of DNA barcoding for taxonomy. Syst Biol 54:852–859

    Article  PubMed  Google Scholar 

  • Hebert PDN, Cywinska AS, Gall L, De Waard JR (2003) Biological identification through DNA Barcodes. Proc R Soc Lond B 270:313–332

    Article  CAS  Google Scholar 

  • Hortal J, De Bello F, Diniz-Filho JAF, Lewinsohn TM, Lobo JM, Ladle RJ (2015) Seven shortfalls that beset large-scale knowledge of biodiversity. Annu Rev Ecol Evol Syst 46:523–549

    Article  Google Scholar 

  • LaSalle J, Wheeler Q, Jackway P, Winterton S, Hobern D, Lovell D (2009) Accelerating taxonomic discovery through automated extraction. Zootaxa 2217:43–55

    Google Scholar 

  • Lopes GN, Arias OR, Cônsoli FL, Zucchi RA (2013) The identity of specimens of the Anastrepha fraterculus complex (Diptera, Tephritidae) with atypical aculeus tip. Neotrop Entomol 42:618–627

    Article  CAS  PubMed  Google Scholar 

  • MacLeod N, Genfield M, Culverhouse P (2010) Time to automate identification. Nature 467:154–155

    Article  CAS  PubMed  Google Scholar 

  • Mahmoudi F, Shanbehzadeh J, Eftekhari-Moghadam A, Soltanian-Zadeh H (2003) Image retrieval based on shape similarity by edge orientation autocorrelogram. Pattern Recognit 36:1725–1736

    Article  Google Scholar 

  • Otsu N (1979) A threshold selection method from gray-level histograms, systems. IEEE Trans Man Cybernet 9:62–66

    Article  Google Scholar 

  • Perre P, Jorge LR, Lewinsohn TM, Zucchi RA (2014) Morphometric differentiation of fruit fly pest species of the Anastrepha fraterculus group (Diptera: Tephritidae). Ann Entomol Soc Am 107:490–495

    Article  Google Scholar 

  • Russell K, Do M, Huv J, Platnick N (2007) Introducing SPIDA-web: wavelets, neural networks and Internet accessibility in an image-based automated identification system. Syst Assoc 74:131–152

    Google Scholar 

  • Santana FS, Costa AHR, Truzzi FS, Silva FL, Santos SL, Francoy TM, Saraiva AM (2014) A reference process for automating bee species identification based on wing images and digital image processing. Ecol Inform 24:248–260

    Article  Google Scholar 

  • Silva OLR (2000) Controle do trânsito de hospedeiros de moscas-das-frutas. In: Malavasi A, Zucchi RA (eds) Moscas-das-frutas de importância econômica no Brasil: conhecimento básico e aplicado. Holos Editora, Ribeirão Preto, pp 29–40

    Google Scholar 

  • Smith-Caldas MRB, McPheron BA, Silva JG, Zucchi RA (2001) Phylogenetic relationship among species of the fraterculus group (Anastrepha: Diptera: Tephritidae) inferred from DNA sequences of mitochondrial cytochrome oxidase I. Neotrop Entomol 30:565–573

    Article  CAS  Google Scholar 

  • Swain M, Ballard D (1991) Color indexing. Int J Comput Vis 1:11–32

    Article  Google Scholar 

  • Watson AT, O’Neill MA, Kitching IJ (2003) A qualitative study investigating automated identification of living macrolepidoptera using the Digital Automated Identification SYstem (DAISY). Syst Biodivers 1:287–300

    Article  Google Scholar 

  • Weeks PJD, Gaston KJ (1997) Image analysis, neural networks, and the taxonomic impediment to biodiversity studies. Biodivers Conserv 6:263–274

    Article  Google Scholar 

  • Weeks PJD, O’Neill MA, Gaston KJ, Gauld ID (1999) Automating insect identification: exploring the limitation of a prototype system. J Appl Entomol 123:1–8

    Article  Google Scholar 

  • Wheeler QD, Raven PH, Willson EO (2004) Taxonomy: impediment or expedient? Science 303:285

    Article  CAS  PubMed  Google Scholar 

  • Zucchi RA (2000) Taxonomia. In: Malavasi A, Zucchi RA (eds) Moscas-das-frutas de importância econômica no Brasil: conhecimento básico e aplicado. Holos Editora, Ribeirão Preto, pp 13–24

    Google Scholar 

Download references

Acknowledgments

PP was supported by a graduate scholarship from the Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES). LRJ was supported by graduate and post-doctoral grants by Fapesp (grants 09/54806-0 and 14/16082-9). RAZ, RST, and AR are research fellows of the National Council for Scientific Research (CNPq). This study is part of the dissertation presented by PP to obtain a M.Sc. in Entomology at ESALQ/University of São Paulo.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to P Perre.

Additional information

Edited by Ranyse B Querino – Embrapa

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Perre, P., Faria, F.A., Jorge, L.R. et al. Toward an Automated Identification of Anastrepha Fruit Flies in the fraterculus group (Diptera, Tephritidae). Neotrop Entomol 45, 554–558 (2016). https://doi.org/10.1007/s13744-016-0403-0

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s13744-016-0403-0

Keywords

Navigation