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CORAL: predictions of retention indices of volatiles in cooking rice using representation of the molecular structure obtained by combination of SMILES and graph approaches

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Abstract

A quantitative structure–retention relationship model is built up by CORAL software based on representation of the molecular structure by simplified molecular input line entry system and graphical representation. This model was used for the prediction of linear retention indices of 96 volatiles in cooking rice. The hybrid version of the molecular structure representation by combination of SMILES and the molecular graph provided the best correlation of the prediction for the considered retention indices. The reliability of established model was evaluated using the leave-many-out cross-validation method (Q 2 = 0.932) as well as by y scrambling that reveals the suitability of the developed model. The results of the present study show that CORAL software can be used to accurately predict of linear retention indices of chemicals in gas chromatography.

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References

  1. Q.N. Hu, Y.Z. Liang, K.T.J. Fang, J. Data. Sci. 1, 361–389 (2003)

    Google Scholar 

  2. A.A. Toropov, T.W.J. Schultz, Chem. Inf. Comput. Sci. 43, 560–567 (2003)

    Article  CAS  Google Scholar 

  3. N. Dela Cruz, G.S. Khush, Rice grain quality evaluation procedures, in Aromatic rices, ed. by R.K. Singh, U.S. Singh, G.S. Khush (Oxford & IBH Publishing, New Delhi, 2000), pp. 16–28

    Google Scholar 

  4. S.A. Goff, H.J. Klee, Science 311, 815–819 (2006)

    Article  CAS  Google Scholar 

  5. I.G. Zenkevich, J. Struct. Chem. 40, 101–107 (1999)

    Article  CAS  Google Scholar 

  6. L.S. Anker, P.C. Jurs, P.A. Edwards, Anal. Chem. 62, 2676–2684 (1990)

    Article  CAS  Google Scholar 

  7. M.H. Fatemi, H. Malekzadeh, H. Shamseddin, J. Sep. Sci. 32, 653–659 (2009)

    Article  CAS  Google Scholar 

  8. M.H. Fatemi, H. Malekzadeh, Bull. Chem. Soc. Jpn 83, 233–245 (2010)

    Article  CAS  Google Scholar 

  9. M.H. Fatemi, H. Shamseddin, H. Malekzadeh, J. Sep. Sci. 32, 1934–1940 (2009)

    Article  CAS  Google Scholar 

  10. M. Ghorbanzad’e, M.H. Fatemi, M. Karimpour, P.L. Andersson, Talanta 85, 2686–2694 (2011)

    Article  Google Scholar 

  11. K. Héberger, J. Chromatogr. A 1158, 273–305 (2007)

    Article  Google Scholar 

  12. K. Bodzioch, T. Bączek, R. Kaliszan, Y.V. Heyden, J. Pharm. Biomed. Anal. 50, 563–569 (2009)

    Article  CAS  Google Scholar 

  13. T. Durcekova, K. Boronova, J. Mocak, J. Lehotay, J. Cizmarik, J. Pharm. Biomed. Anal. 59, 209–216 (2012)

    Article  CAS  Google Scholar 

  14. R.J. Hu, H.X. Liu, R.S. Zhang, C.X. Xue, X.J. Yao, M.C. Liu, Z.D. Hu, B.T. Fan, Talanta 68, 31–39 (2005)

    Article  CAS  Google Scholar 

  15. M.H. Fatemi, J. Chromatogr. A 955, 273–280 (2002)

    Article  CAS  Google Scholar 

  16. J. Acevedo-Martínez, J.C. Escalona-Arranz, A. Villar-Rojas, F. Tellez-Palmero, R. Perez-Roses, L. Gonzalez, R. Carrasco-Velar, J. Chromatogr. A 1102, 238–244 (2006)

    Article  Google Scholar 

  17. A.A. Toropov, A.P. Toropova, B.F. Rasulev, E. Benfenati, G. Gini, D. Leszczynska, J. Leszczynski, J. Comput. Chem. 33, 1902–1906 (2012)

    Article  CAS  Google Scholar 

  18. A. Andrey, A.A. Toropov, A.P. Toropova, I. Gutman, Croat. Chem. Acta 78, 503–509 (2005)

    Google Scholar 

  19. D. Weininger, J. Chem. Inform. Comput. Sci. 28, 31–36 (1988)

    Article  CAS  Google Scholar 

  20. D. Weininger, A. Weininger, J.L. Weininger, J. Chem. Inform. Comput. Sci. 29, 97–101 (1989)

    Article  CAS  Google Scholar 

  21. D. Weininger, J. Am. Chem. Soc. 30, 237–243 (1990)

    CAS  Google Scholar 

  22. A.P. Toropova, A.A. Toropov, A. Lombardo, A. Roncaglioni, E. Benfenati, G. Gin, J. Comput. Chem. 33, 1218–1223 (2012)

    CAS  Google Scholar 

  23. A.A. Toropov, A.P. Toropova, E. Benfenati, Chem. Phys. Lett. 461, 343–347 (2008)

    Article  CAS  Google Scholar 

  24. A.A. Toropov, A.P. Toropova, E. Benfenati, G. Gini, D. Leszczynska, J. Leszczynski, Chemosphere 90, 77–880 (2013)

    Article  Google Scholar 

  25. A.A. Toropov, A.P. Toropova, E. Benfenati, G. Gini, T. Puzyn, D. Leszczynska, J. Leszczynski, Chemosphere 89, 1098–1102 (2012)

    Article  CAS  Google Scholar 

  26. A.P. Toropova, A.A. Toropov, E. Benfenati, G. Gini, D. Leszczynska, J. Leszczynski, Chemometr. Intell. Lab. Syst. 118, 70–73 (2012)

    Article  CAS  Google Scholar 

  27. A.P. Toropova, A.A. Toropov, Eur. J. Pharm. Sci. 52, 21–25 (2014)

    Article  CAS  Google Scholar 

  28. Z. Zeng, H. Zhang, T. Zhang, S. Tamogami, J.Y. Chen, J. Food. Compos. Anal. 22, 347–353 (2009)

    Article  CAS  Google Scholar 

  29. A.A. Toropov, E. Benfenati, Bioorg. Med. Chem. 26, 4801–4809 (2008)

    Article  Google Scholar 

  30. A.A. Toropov, A.P. Toropova, I. Raska Jr, Eur. J. Med. Chem. 43, 714–740 (2008)

    Article  CAS  Google Scholar 

  31. A. Golbraikh, A. Tropsha, J. Mol. Graph. Model. 20, 269–276 (2002)

    Article  CAS  Google Scholar 

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Correspondence to Mohammad H. Fatemi.

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Fatemi, M.H., Malekzadeh, H. CORAL: predictions of retention indices of volatiles in cooking rice using representation of the molecular structure obtained by combination of SMILES and graph approaches. J IRAN CHEM SOC 12, 405–412 (2015). https://doi.org/10.1007/s13738-014-0497-4

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  • DOI: https://doi.org/10.1007/s13738-014-0497-4

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