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The complete chloroplast genome sequence of an endangered traditional Chinese medicine plant Dendrobium candidum (Orchidaceae)

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Abstract

Dendrobium candidum Lindl. is an endangered lithophytic orchid distrubuted in the subtropical regions of China which was listed in the category of the Convention on International Trade in Endangered Species of Wild Fauna and Flora (CITES). Here, we reported the complete chloroplast (cp) genome sequence and the cp genomic features of D. candidum. The genome was 152,094 bp long with 129 genes comprising 83 protein-coding genes, 40 tRNA genes, and six rRNA genes. Most of the genes occurred as a single-copy, while 18 occurred in two copies. Phylogenetic analysis of a data set of cp genomes indicated that D. candidum is closely related to that of other species in Dendrobium.

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References

  • Asahina H, Shinozaki J, Masuda K, Morimitsu Y, Satake M (2010) Identification of medicinal Dendrobium species by phylogenetic analyses using matK and rbcL sequences. J Nat Med 64:133–138

    Article  CAS  PubMed  Google Scholar 

  • Halberstein RA (2005) Medicinal plants: historical and cross-cultural usage patterns. Ann Epidemiol 15:686–699

    Article  PubMed  Google Scholar 

  • Lau DTW., Shaw PC, Wang J, But PPH (2001) Authentication of medicinal Dendrobium species by the internal transcribed spacer of ribosomal DNA. Planta Med 67:456–460

    Article  CAS  PubMed  Google Scholar 

  • Nock CJ, Waters DL, Edwards MA, Bowen SG, Rice N, Cordeiro GM, Henry RJ (2011) Chloroplast genome sequences from total DNA for plant identification. Plant Biotechnol 9:328–333

    Article  CAS  Google Scholar 

  • Shoemaker M, Hamilton B, Dairkee SH, Cohen I, Campbell MJ (2005). In vitro anticancer activity of twelve Chinese medicinal herbs. Phytother Res 19:649–651

    Article  PubMed  Google Scholar 

  • Takamiya T, Wongsawad P, Tajima N, Shioda N, Lu JF, Wen CL, Wu JB, Handa T, Iijima H, Kitanaka S et al (2011) Identification of Dendrobium species used for herbal medicines based on ribosomal DNA internal transcribed spacer sequence. Biol Pharm Bull 34:779–782

    Article  CAS  PubMed  Google Scholar 

  • Wojcikowski K, Gobe G (2014). Animal studies on medicinal herbs: predictability, dose conversion and potential value. Phytother Res 28:22–27

    Article  PubMed  Google Scholar 

  • Wyman SK, Jansen RK, Boore JL (2004) Automatic annotation of organellar genomes with dogma. Bioinformatics 20(17):3252–3255

    Article  CAS  PubMed  Google Scholar 

  • Xi GJ, Zhao GH, Ju R (2010). Advances in the cultivation techniques of Dendrobium officinale [J]. Med Plant 3:67–70

    Google Scholar 

  • Yukawa TA, Kurokawa M, Sato H, Yoshida Y, Kageyama S, Hasegawa T, Namba T, Imakita M, Hozumi T, Shiraki K (1996) Prophylactic treatment of cytomegalovirus infection with traditional herbs. Antiviral Res 32:63–70

    Article  CAS  PubMed  Google Scholar 

  • Zhang YB, Wang J, Wang ZT, But, P.P.H., Shaw PC (2003) DNA microarray for identification of the herb of Dendrobium species from Chinese medicinal formulations. Planta Med 69:1172–1174

    Article  CAS  PubMed  Google Scholar 

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Funding

This project was funded by Yunnan Provincial Department of Education Research Fund (2016ZZX315).

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Correspondence to Yun-jiao Zhang.

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Zhang, Yj., Song, J. & Cheng, X. The complete chloroplast genome sequence of an endangered traditional Chinese medicine plant Dendrobium candidum (Orchidaceae). Conservation Genet Resour 10, 9–11 (2018). https://doi.org/10.1007/s12686-017-0750-0

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  • DOI: https://doi.org/10.1007/s12686-017-0750-0

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