Abstract
The genus Sclerocactus (Cactaceae) consists of 15 species, which have a confused taxonomic history due to morphological similarities and distribution overlap. Habitat loss and hybridization are of concern and have established cause for genetic investigations to further understand the genus and develop conservation strategies. Thirteen variable microsatellite loci were identified using S. glaucus and S. parviflorus and were tested in three additional species: S. wetlandicus, S. brevispinus and S. cloverii. The mean number of alleles per locus ranged from 2 to 11, with an average of 6.6. The observed and expected mean heterozygosity ranged from 0.00 to 0.90 and 0.26 to 0.90, respectively. These loci will aid in determining levels of hybridization, diversity and taxonomy of Sclerocactus.
References
Boutin-Ganache I, Raposo M, Raymond M, Deschepper CF (2001) M13-tailed primers improve the readability and usability of microsatellite analyses performed with two different allele-sizing methods. Biotechniques 31:24–28
Glenn TC (2006) 5′ Primer tags; a cheap way to flourecently tag PCR products. Unpublished manual. Savannah River Ecology Lab, Department of Biological Sciences. University of South Carolina, Columbia
Glenn TC, Schable M (2002) Microsatellite isolation with dynabeads 2002. Unpublished manual. Savannah River Ecology Laboratory, Aiken, South Carolina
Hamilton MB, Pincus EL, Di Fiore A, Fleischer RC (1999) Universal linker and ligation procedures for construction of genomic DNA libraries enriched for microsatellites. Biotechniques 27:500–507
Heil KD, Porter JM (2004) Sclerocactus. In: Flora of North America Editorial Committee (ed) Flora of north America, north of Mexico, vol 4. Magnoliophyta: Caryophyllidae, part 1. Oxford University Press, NY, pp 197–207
Hochstätter F (1989) Nieubeschrijving Sclerocactus wetlandicus species nova-Een nieuwe Sclerocactus uit Uintah County, Utah, USA. Succulenta 68:123–126
Peakall R, Smouse PE (2006) GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes 6:288–295
Porter JM, Kinnery MS, Heil KD (2000) Relationships between Sclerocactus and Toumeya (Cactaceae) based on chloroplast trnL-trnF sequences. Haseltonia 7:8–23
Raymond M, Rousset F (1995) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. J Heredity 86:248–249
Rousset F (2008) Genepop’007: a complete reimplementation of the Genepop software for Windows and Linux. Mol Ecol Resour 8:103–106
Rozen S, Skaletsky HJ (2000) Primer3 on the WWW for general users and for biologist programmers. In: Misener S, Krawetz SA (eds) Bioinformatics methods and protocols. Humana Press, Totowa, pp 365–386
USDA (2011) Technical note: threatened, endangered, candidate and proposed plant species of Utah. TN Plant Mater 52:42–43
USFWS (1979) Determination that Sclerocactus glaucus is a threatened species. Fed Reg 44:58868–58870
Van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004) MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4:535–538
Werle E, Schneider C, Renner M, Volker M, Fiehn W (1994) Convenient single-step, one tube purification of PCR products for direct sequencing. Nucleic Acids Res 22:4354–4355
Acknowledgments
This research was funded by the United States Fish and Wildlife Service. Floral tissue was collected by Denver Botanic Gardens and laboratory research was conducted at the University of Northern Colorado.
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Schwabe, A.L., Hubbard, A.R., Neale, J.R. et al. Microsatellite loci development for rare Colorado Sclerocactus (Cactaceae). Conservation Genet Resour 5, 69–72 (2013). https://doi.org/10.1007/s12686-012-9735-1
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DOI: https://doi.org/10.1007/s12686-012-9735-1