Skip to main content

Advertisement

Log in

Isolation and characterization of tetranucleotide microsatellites from the leatherback turtle (Dermochelys coriacea)

  • Technical Note
  • Published:
Conservation Genetics Resources Aims and scope Submit manuscript

Abstract

The leatherback turtle (Dermochelys coriacea) is a globally endangered marine species. Numerous questions regarding life history and demographics that are of conservation interest remain and many of these can be addressed through the use of highly polymorphic nuclear markers. We describe primers and polymerase chain reaction conditions to amplify 19 tetranucleotide microsatellite loci from the leatherback turtle. The primers were tested on samples from 22 females that nested at Archie Carr National Wildlife Refuge, Melbourne Beach, Florida, USA. The primers developed in this study yielded an average of 9.4 alleles per locus (range of 5–19) and an average observed heterozygosity of 0.84 (range 0.36–1.00). These markers should prove useful in supplementing existing markers for individual and population level analyses.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

References

  • Aggarwal RK, Lalremruata A, Velavan TP, Sowjanya AP, Singh L (2008) Development and characterization of ten novel microsatellite markers from olive ridley sea turtle (Lepidochlys olivacea). Conser Genet 9:981–984

    Article  CAS  Google Scholar 

  • Boutin-Ganache I, Raposo M, Raymond M, Deschepper CF (2001) M13-tailed primers improve the readability and usability of microsatellite analyses performed with two different allele sizing methods. Biotechniques 31:24–28

    PubMed  CAS  Google Scholar 

  • Don RH, Cox PT, Wainwright BJ (1991) Touchdown PCR to prevent spurious priming during gene amplification. Nucleic Acids Res 19:4008

    Article  PubMed  CAS  Google Scholar 

  • Dutton PH, Bowen BW, Owens DW, Barragan A, Davis SK (1999) Global phylogeography of the leatherback turtle (Dermochelys coriacea). J Zool 248:397–409

    Article  Google Scholar 

  • Dutton PH, Hitipeuw C, Zein M, Benson SR, Petro G, Pita J, Rei V, Ambio L, Bakarbessy J (2007) Status and genetic structure of nesting populations of leatherback turtles (Dermochelys coriacea) in the western Pacific. Chelonian Conserv Biol 6:47–53

    Article  Google Scholar 

  • Faircloth BC (2006) GMCONVERT: file conversion for GeneMapper output files. Mol Ecol Notes 6(4):968–970

    Article  Google Scholar 

  • Faircloth BC (2008) MSATCOMMANDER: detection of microsatellite repeat arrays and automated, locus-specific primer design. Mol Ecol Resour 8:92–94

    Article  PubMed  CAS  Google Scholar 

  • FitzSimmons NN, Moritz C, Moore SS (1995) Conservation and dynamics of microsatellite loci over 300 million years of marine turtle evolution. Mol Biol Evol 12:432–440

    PubMed  CAS  Google Scholar 

  • Glenn TC, Schable NA (2005) Isolating microsatellite DNA loci. In: Zimmer EA, Roalson EH (eds) Methods in enzymology 395, molecular evolution: producing the biochemical data, part B. Academic Press, San Diego, CA

    Google Scholar 

  • Hilton-Taylor C (compiler) (2000) IUCN red list of threatened species. IUCN, Cambridge

    Google Scholar 

  • Kalinowski ST, Taper ML, Marshall TC (2007) Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment. Mol Ecol 16:1006–1099

    Article  Google Scholar 

  • Monzón-Argüello C, Muñoz J, Marco A, López-Jurado LF, Rico C (2008) Twelve new polymorphic microsatellite markers from the loggerhead sea turtle (Caretta caretta) and cross-species amplification on other marine turtle species. Conserv Genet 9:1045–1049

    Article  Google Scholar 

  • Raymond M, Rousset F (1995) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. J Heredity 86:248–249

    Google Scholar 

  • Rice WR (1989) Analyzing tables of statistical tests. Evolution 43:223–225

    Article  Google Scholar 

  • Roden SE, Dutton PH (2010) Isolation and characterization of 14 polymorphic microsatellite loci in the leatherback turtle (Dermochelys coriacea). Conser Genet Res. doi:10.1007/s12686-010-9284-4

  • Rozen S, Skaletsky HJ (2000) PRIMER3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S (eds) Bioinformatics methods and protocols: methods in molecular biology. Humana Press, Totowa, NJ, pp 338–365

    Google Scholar 

  • Shamblin BM, Faircloth BC, Dodd M, Wood-Jones A, Castleberry SB, Carroll JP, Nairn CJ (2007) Tetranucleotide microsatellites from loggerhead sea turtle (Caretta caretta). Mol Ecol Notes 7:784–787

    Article  CAS  Google Scholar 

  • Shamblin BM, Faircloth BC, Dodd M, Bagley D, Ehrhart LM, Dutton PH, Frey A, Nairn CJ (2009) Tetranucleotide markers from the loggerhead sea turtle (Caretta caretta) and their cross-amplification in other marine turtle species. Conserv Genet 10(3):577–580

    Article  CAS  Google Scholar 

  • Spotila JR, Dunham AE, Leslie AJ, Steyermark AC, Plotkin PT, Paladino FV (1996) Worldwide decline of Dermochelys coriacea: are leatherback turtles going extinct? Chelonian Conserv Biol 2:209–222

    Google Scholar 

Download references

Acknowledgments

Samples were collected under Florida Fish and Wildlife Conservation Commission Marine Turtle Permit #25 and Animal Care and Use Committee Permit # A2009 3-050. We thank the many students representing the University of Central Florida Marine Turtle Research crew that collected genetics samples. We gratefully acknowledge funding from the Warnell School of Forestry and Natural Resources.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Campbell J. Nairn.

Additional information

Travis I. Alstad and Brian M. Shamblin contributed equally to this work.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Alstad, T.I., Shamblin, B.M., Bagley, D.A. et al. Isolation and characterization of tetranucleotide microsatellites from the leatherback turtle (Dermochelys coriacea). Conservation Genet Resour 3, 457–460 (2011). https://doi.org/10.1007/s12686-010-9378-z

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s12686-010-9378-z

Keywords

Navigation