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Arthrobacter soli sp. nov., a novel bacterium isolated from wastewater reservoir sediment

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Abstract

A novel Gram-positive bacterium, designated SYB2T, was isolated from wastewater reservoir sediment, and a polyphasic taxonomic study was conducted based on its morphological, physiological, and biochemical features, as well as the analysis of its 16S rRNA gene sequence. During the phylogenetic analysis of the strain SYB2T, results of a 16S rRNA gene sequence analysis placed this bacterium in the genus Arthrobacter within the family Micrococcaceae. SYB2T and Arthrobacter protophormiae ATCC 19271T, the most closely related species, both exhibited a 16S rRNA gene sequence similarity of 98.99%. The genomic DNA G+C content of the novel strain was found to be 62.0 mol%. The predominant fatty acid composition was ante-iso-C15:0, anteiso-C17:0, iso-C16:0, and iso-C15:0. Analysis of 16S rRNA gene sequences and DNA-DNA related-ness, as well as physiological and biochemical tests, showed genotypic and phenotypic differences between strain SYB2T and other Arthrobacter species. The type strain of the novel species was identified as SYB2T (= KCTC 19291T= DSM 19449T).

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References

  • Buck, J.D. 1982. Nonstaining (KOH) method for determination of Gram reactions of marine bacteria. Appl. Environ. Microbiol. 44, 992–993.

    PubMed  CAS  Google Scholar 

  • Chen, M., X. Xiao, P. Wang, X. Zeng, and F. Wang. 2005. Arthrobacter ardleyensis sp. nov., isolated from Antarctic lake sediment and deep-sea sediment. Arch. Microbiol. 183, 301–305.

    Article  PubMed  CAS  Google Scholar 

  • Chun, J., J.H. Lee, Y. Jung, M. Kim, S. Kim, B.K. Kim, and Y.W. Lim. 2007. EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int. J. Syst. Evol. Microbiol. 57, 2259–2261.

    Article  PubMed  CAS  Google Scholar 

  • Collins, M.D., L. Hoyles, G. Foster, E. Falsen, and N. Weiss 2002. Arthrobacter nasiphocae sp. nov., from the common seal (Phoca vitulina). Int. J. Syst. Evol. Microbiol. 52, 569–571.

    PubMed  Google Scholar 

  • Conn, H.J. 1928. A type of bacteria abundant in productive soils, but apparently lacking in certain soils of low productivity. NY. Agric. Exp. Stn. Geneva Bull. 138, 3–26.

    Google Scholar 

  • Conn, J. and I. Dimmick. 1947. Soil bacteria similar in morphology to Mycobacterium and Corynebacterium. J. Bacteriol. 54, 291–303.

    PubMed  CAS  Google Scholar 

  • Ezaki, T., H. Hashimoto, and E. Yabuuchi. 1989. Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int. J. Syst. Bacteriol. 39, 224–229.

    Google Scholar 

  • Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783–791.

    Article  Google Scholar 

  • Funke, G., R.A. Hutson, K.A. Bernard, G.E. Pfyffer, G. Wauters, and M.D. Collins. 1996. Isolation of Arthrobacter spp. from clinical specimens and description of Arthrobacter cumminsii sp. nov. and Arthrobacter woluwensis sp. nov. J. Clin. Microbiol. 34, 2356–2363.

    PubMed  CAS  Google Scholar 

  • Gupta, P., G.S. Reddy, D. Delille, and S. Shivaji. 2004. Arthrobacter gangotriensis sp. nov. and Arthrobacter kerguelensis sp. nov. from Antarctica. Int. J. Syst. Evol. Microbiol. 54, 2375–2378.

    Article  PubMed  CAS  Google Scholar 

  • Heyrman, J., J. Verbeeren, P. Schumann, J. Swings, and P. De Vos. 2005. Six novel Arthrobacter species isolated from deteriorated mural paintings. Int. J. Syst. Evol. Microbiol. 55, 1457–1464.

    Article  PubMed  CAS  Google Scholar 

  • Hou, X.G., Y. Kawamura, F. Sultana, S. Shu, K. Hirose, K. Goto, and T. Ezaki. 1998. Description of Arthrobacter creatinolyticus sp. nov., isolated from human urine. Int. J. Syst. Bacteriol. 48, 423–429.

    PubMed  CAS  Google Scholar 

  • Huang, Y., N. Zhao, L. He, L. Wang, Z. Liu, M. You, and F. Guan. 2005. Arthrobacter scleromae sp. nov. isolated from human clinical specimens. J. Clin. Microbiol. 43, 1451–1455.

    Article  PubMed  Google Scholar 

  • Irlinger, F., F. Bimet, J. Delettre, M. Lefevre, and P.A. Grimont. 2005. Arthrobacter bergerei sp. nov. and Arthrobacter arilaitensis sp. nov., novel coryneform species isolated from the surfaces of cheeses. Int. J. Syst. Evol. Microbiol. 55, 457–462.

    Article  PubMed  CAS  Google Scholar 

  • Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16, 111–120.

    Article  PubMed  CAS  Google Scholar 

  • Kotouckova, L., P. Schumann, E. Durnova, C. Sproer, I. Sedlacek, J. Neca, Z. Zdrahal, and M. Nemec. 2004. Arthrobacter nitroguajacolicus sp. nov., a novel 4-nitroguaiacol-degrading actinobacterium. Int. J. Syst. Evol. Microbiol. 54, 773–777.

    Article  PubMed  CAS  Google Scholar 

  • Kumar, S., K. Tamura, and M. Nei. 2004. MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinform. 5, 150–163.

    Article  PubMed  CAS  Google Scholar 

  • Lane, D.J. 1991. 16S/23S rRNA sequencing. In Nucleic acid techniques in bacterial systematics. John Wiley and Sons, New York, NY, USA.

    Google Scholar 

  • Lee, J.S., K.C. Lee, Y.R. Pyun, and K.S. Bae. 2003. Arthrobacter koreensis sp. nov., a novel alkalitolerant bacterium from soil. Int. J. Syst. Evol. Microbiol. 53, 1277–1280.

    Article  PubMed  CAS  Google Scholar 

  • Li, Y., Y. Kawamura, N. Fujiwara, T. Naka, H. Liu, X. Huang, K. Kobayashi, and T. Ezaki. 2004. Rothia aeria sp. nov., Rhodococcus baikonurensis sp. nov. and Arthrobacter russicus sp. nov., isolated from air in the Russian space laboratory Mir. Int. J. Syst. Evol. Microbiol. 54, 827–835.

    Article  PubMed  CAS  Google Scholar 

  • Margesin, R., P. Schumann, C. Sproer, and A.M. Gounot. 2004. Arthrobacter psychrophenolicus sp. nov., isolated from an alpine ice cave. Int. J. Syst. Evol. Microbiol. 54, 2067–2072.

    Article  PubMed  CAS  Google Scholar 

  • Mesbah, M. and W.B. Whitman. 1989. Measurement of deoxyguanosine/thymidine ratios in complex mixtures by high-performance liquid chromatography for determination of the mole percentage guanine+cytosine of DNA. J. Chromatogr. 479, 297–306.

    Article  PubMed  CAS  Google Scholar 

  • Osorio, C.R., J.L. Barja, R.A. Hutson, and M.D. Collins. 1999. Arthrobacter rhombi sp. nov., isolated from Greenland halibut (Reinhardtius hippoglossoides). Int. J. Syst. Bacteriol. 49, 1217–1220.

    PubMed  CAS  Google Scholar 

  • Reddy, G.S., R.K. Aggarwal, G.I. Matsumoto, and S. Shivaji. 2000. Arthrobacter flavus sp. nov., a psychrophilic bacterium isolated from a pond in McMurdo Dry Valley, Antarctica. Int. J. Syst. Evol. Microbiol. 50, 1553–1561.

    PubMed  CAS  Google Scholar 

  • Reddy, G.S., J.S. Prakash, G.I. Matsumoto, E. Stackebrandt, and S. Shivaji. 2002. Arthrobacter roseus sp. nov., a psychrophilic bacterium isolated from an antarctic cyanobacterial mat sample. Int. J. Syst. Evol. Microbiol. 52, 1017–1021.

    Article  PubMed  CAS  Google Scholar 

  • Saitou, N. and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406–425.

    PubMed  CAS  Google Scholar 

  • Sasser, M. 1990. Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note No.101. Newark, DE: MIDI Inc., USA.

    Google Scholar 

  • Stackebrandt, E., V. Fowler, F. Fiedler, and H. Seiler. 1983. Taxonomic studies on Arthrobacter nicotianae and related Taxa: Description of Arthrobacter uratoxydans sp. nov. and Arthrobacter sulfurous sp. nov. and reclassification of Brevibacterium protophormiae as Arthrobacter protophormiae comb nov. Syst. Appl. Microbiol. 4, 470–486.

    CAS  Google Scholar 

  • Storms, V., L.A. Devriese, R. Coopman, P. Schumann, F. Vyncke, and M. Gillis. 2003. Arthrobacter gandavensis sp. nov., for strains of veterinary origin. Int. J. Syst. Evol. Microbiol. 53, 1881–1884.

    Article  PubMed  CAS  Google Scholar 

  • Thompson, J.D., T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins. 1997. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25, 4876–4882.

    Article  PubMed  CAS  Google Scholar 

  • Tvrzova, L., P. Schumann, C. Sproer, I. Sedlacek, S. Verbarg, R.M. Kroppenstedt, and Z. Pacova. 2005. Polyphasic taxonomic study of strain CCM 2783 resulting in the description of Arthrobacter stackebrandtii sp. nov. Int. J. Syst. Evol. Microbiol. 55, 805–808.

    Article  PubMed  CAS  Google Scholar 

  • Wauters, G., J. Charlier, M. Janssens, and M. Delmee. 2000. Identification of Arthrobacter oxydans, Arthrobacter luteolus sp. nov., and Arthrobacter albus sp. nov., isolated from human clinical specimens. J. Clin. Microbiol. 38, 2412–2415.

    PubMed  CAS  Google Scholar 

  • Wayne, L.G., D.J. Brenner, and R.R. Colwell. 1987. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int. J. Syst. Bacteriol. 37, 463–464.

    Article  Google Scholar 

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Correspondence to Jin-Woo Bae.

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Roh, S.W., Sung, Y., Nam, YD. et al. Arthrobacter soli sp. nov., a novel bacterium isolated from wastewater reservoir sediment. J Microbiol. 46, 40–44 (2008). https://doi.org/10.1007/s12275-007-0239-8

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  • DOI: https://doi.org/10.1007/s12275-007-0239-8

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