Skip to main content
Log in

Umbelopsis changbaiensis sp. nov. from China and the typification of Mortierella vinacea

  • Original Article
  • Published:
Mycological Progress Aims and scope Submit manuscript

Abstract

Umbelopsis changbaiensis is described as a new species of the genus Umbelopsis, Umbelopsidaceae, Mucorales. It was isolated from forest soil mix in Changbai Mountain, Jilin Province, China. The new species is distinct from all the previously described species mainly in colony color, branching type of sporangiophores, and shape and size of columellae. Maximum growth temperatures and phylogenetic analyses of the internal transcribed spacer (ITS1–5.8S–ITS2 region), partial large subunit (28S D1–D3 region) of rDNA, and partial actin gene (act-1) support the morphological result. The closest ally of U. changbaiensis is U. vinacea whose basionym Mortierella vinacea was published by Dixon-Stewart in 1932 without any type material indicated. The only figure provided in the protologue is designated here as the lectotype of M. vinacea and a dry culture from its authentic strain CBS 212.32 is designated here as an epitype for this lectotype. Descriptions and illustrations are provided for both U. changbaiensis and U. vinacea.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4

Similar content being viewed by others

References

  • Abe A, Asano K, Sone T (2010) A molecular phylogeny-based taxonomy of the genus Rhizopus. Biosci Biotechnol Biochem 74:1325–1331

    Article  CAS  PubMed  Google Scholar 

  • Alastruey-Izquierdo A, Hoffmann K, de Hoog GS, Rodriguez-Tudela JL, Voigt K, Bibashi E, Walther G (2010) Species recognition and clinical relevance of the zygomycetous genus Lichtheimia (syn. Absidia pro parte, Mycocladus). J Clin Microbiol 48:2154–2170

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Alfaro ME, Zoller S, Lutzoni F (2003) Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence. Mol Biol Evol 20:255–266

    Article  CAS  PubMed  Google Scholar 

  • Amos RE, Barnett HL (1966) Umbelopsis versiformis, a new genus and species of the imperfects. Mycologia 58:805–808

    Article  Google Scholar 

  • Chen FJ (1986) The genus Mortierella Coemans in China. Dissertation, Graduate University of Chinese Academy of Sciences

  • Chen FJ (1992) Mortierella species in China. Mycosystema 5:23–64

    Google Scholar 

  • Cowley GT (1962) Contribution to a study of the physiological basis for distributional patterns of soil microfungi in Wisconsin. Dissertation, University of Wisconsin

  • Dixon-Stewart D (1932) Species of Mortierella isolated from soil. Trans Br Mycol Soc 17:208–220

    Article  Google Scholar 

  • Domsch KH, Gams W, Anderson TH (1980) Compendium of soil fungi, vol 1. Academic Press, London

    Google Scholar 

  • Evans EH (1971) Studies on Mortierella ramanniana. I. Relationship between morphology and cultural behaviour of certain isolates. Trans Br Mycol Soc 56:201–216

    Article  Google Scholar 

  • Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791

    Article  Google Scholar 

  • Gams W (1977) A key to the species of Mortierella. Persoonia 9:381–391

    Google Scholar 

  • Gelman A, Rubin DB (1992) Inference from iterative simulation using multiple sequences. Stat Sci 7:457–472

    Article  Google Scholar 

  • Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98

    CAS  Google Scholar 

  • Huelsenbeck JP, Crandall KA (1997) Phylogeny estimation and hypothesis testing using maximum likelihood. Annu Rev Ecol Syst 28:437–466

    Article  Google Scholar 

  • Katoh K, Toh H (2008) Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinform 9:286–298

    Article  CAS  PubMed  Google Scholar 

  • Katoh K, Kuma K, Toh H, Miyata T (2005) MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res 33:511–518

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Kendrick B, Smith JE, Neville J, Weber NS (1994) A study of morphological variability, character analysis, and taxonomic significance in the Zygomycetous anamorph-genus Umbelopsis. Mycotaxon 51:15–26

    Google Scholar 

  • Kimura M (1980) A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–120

    Article  CAS  PubMed  Google Scholar 

  • Linnemann G (1941) Die Mucorineen-Gattung Mortierella Coemans. Pflanzenforschung 23:1–64

    Google Scholar 

  • Linnemann G (1969) Mortierella Coemans 1863. In: Zycha H, Siepmann R (eds) Mucorales. J. Cramer, Lehre, pp 155–241

    Google Scholar 

  • Liu XY (2008) Preliminary studies on the molecular systematics of Mucorales. Dissertation, Graduate University of Chinese Academy of Sciences

  • Mahoney D, Gams W, Meyer W, Starink-Willemse M (2004) Umbelopsis dimorpha sp. nov., a link between U. vinacea and U. versiformis. Mycol Res 108:107–111

    Article  PubMed  Google Scholar 

  • Meyer W, Gams W (2003) Delimitation of Umbelopsis (Mucorales, Umbelopsidaceae fam. nov.) based on ITS sequence and RFLP data. Mycol Res 107:339–350

    Article  CAS  PubMed  Google Scholar 

  • Nylander JAA (2004) MrModeltest v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University

  • O’Donnell K, Lutzoni F, Ward TJ, Benny GL (2001) Evolutionary relationships among mucoralean fungi (Zygomycota): Evidence for family polyphyly on a large scale. Mycologia 93:286–296

    Article  Google Scholar 

  • Ogawa Y, Suda A, Kusama-Eguchi K, Watanabe K, Tokumasu S (2005) Intraspecific groups of Umbelopsis ramanniana inferred from nucleotide sequences of nuclear rDNA internal transcribed spacer regions and sporangiospore morphology. Mycoscience 46:343–351

    Article  Google Scholar 

  • Ogawa Y, Sugiyama M, Hirose D, Kusama-Eguchi K, Tokumasu S (2011) Polyphyly of intraspecific groups of Umbelopsis ramanniana and their genetic and morphological variation. Mycoscience 52:91–98

    Article  Google Scholar 

  • Posada D, Crandall KA (2001) Evaluation of methods for detecting recombination from DNA sequences: Computer simulations. Proc Natl Acad Sci 98:13757–13762

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Ridgway R (1912) Color standards and color nomenclature. Published by the author, Washington D.C.

  • Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP (2012) MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol 61:539–542

    Article  PubMed Central  PubMed  Google Scholar 

  • Sugiyama M, Tokumasu S, Gams W (2003) Umbelopsis gibberispora sp. nov. from Japanese leaf litter and a clarification of Micromucor ramannianus var. angulisporus. Mycoscience 44:217–226

    Article  Google Scholar 

  • Swofford DL (2002) PAUP*: Phylogenetic analysis using parsimony (*and other methods). version 4.0b10. Sunderland, Massachusetts, Sinauer Associates

  • Turner M (1963) Studies in the genus Mortierella I. Mortierella isabellina and related species. Tans Br Mycol Soc 46:262–272

    Article  Google Scholar 

  • Vilgalys R, Hester M (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol 172:4239–4246

    Google Scholar 

  • Voigt K, Wöstemeyer J (2000) Reliable amplification of actin genes facilitates deep-level phylogeny. Microbiol Res 155:179–195

    Article  CAS  PubMed  Google Scholar 

  • von Arx JA (1982) On Mucoraceae s. str. and other families of the Mucorales. Sydowia 35:10–26

    Google Scholar 

  • Wang YN, Liu XY, Zheng RY (2013) Four new species records of Umbelopsis (Mucoromycotina) from China. J Mycol. doi:10.1155/2013/970216

    Google Scholar 

  • White TJ, Bruns T, Lee S, Taylor JW (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MAGD, Sninsky JJ, White TJ (eds) PCR Protocols: A Guide to Methods and Applications. Academic Press, Inc, New York, pp 315–322

    Google Scholar 

  • Yip HY (1986) Umbelopsis fusiformis sp. nov. from a wet sclerophyll forest and a new combination for Mortierella ovata. Trans Br Mycol Soc 86:334–337

    Article  Google Scholar 

  • Zheng RY, Chen GQ (2001) A monograph of Cunninghamella. Mycotaxon 80:1–75

    Google Scholar 

  • Zheng RY, Chen GQ, Huang H, Liu XY (2007) A monograph of Rhizopus. Sydowia 59:273–372

    Google Scholar 

Download references

Acknowledgments

The project was partially supported by the National Natural Science Foundation of China (Nos. 31070016 and 31070019) and the Knowledge Innovation Program of the Chinese Academy of Sciences (No. KSCX2-EW-J-6). CBS and NRRL are acknowledged for supplying cultures for this study. The straininfo database (http://www.straininfo.net/) is greatly appreciated for providing information of strains. Thanks are due to Dr. Gerard Verkley of CBS, and Profs. Yi-Jian Yao and Wen-Ying Zhuang of this department for their suggestions on nomenclature. We also thank Ms. Hong-Mei Liu of this research group for taking care of the cultures.

Author information

Authors and Affiliations

Authors

Corresponding authors

Correspondence to Xiao-Yong Liu or Ru-Yong Zheng.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Wang, YN., Liu, XY. & Zheng, RY. Umbelopsis changbaiensis sp. nov. from China and the typification of Mortierella vinacea . Mycol Progress 13, 657–669 (2014). https://doi.org/10.1007/s11557-013-0948-9

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11557-013-0948-9

Keywords

Navigation