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Analysis and Control of Pre-extinction Dynamics in Stochastic Populations

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Abstract

We consider a stochastic population model, where the intrinsic or demographic noise causes cycling between states before the population eventually goes extinct. A master equation approach coupled with a (Wentzel–Kramers–Brillouin) WKB approximation is used to construct the optimal path to extinction. In addition, a probabilistic argument is used to understand the pre-extinction dynamics and approximate the mean time to extinction. Analytical results agree well with numerical Monte Carlo simulations. A control method is implemented to decrease the mean time to extinction. Analytical results quantify the effectiveness of the control and agree well with numerical simulations.

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References

  • Allee WC (1931) Animal aggregations, a study in general sociology. University Chicago Press, Chicago

    Book  Google Scholar 

  • Assaf M, Meerson B (2010) Extinction of metastable stochastic populations. Phys Rev E 81:021116

    Article  Google Scholar 

  • Baranchikov YN, Mattson WJ, Hain FP, Payne TL (1991) Forest insect guilds: patterns of interaction with host trees. Tech. Rep. NE-153, Department of Agriculture, Forest Service, Radnor, PA

  • Berndt A, Yizhar O, Gunaydin LA, Hegemann P, Deisseroth K (2009) Bi-stable neural state switches. Nat Neurosci 12(2):229–234

    Article  Google Scholar 

  • Berryman AA (1996) What causes population cycles of forest lepidoptera? Trends Ecol Evol 11(1):28–32

    Article  Google Scholar 

  • Billings L, Bollt EM, Schwartz IB (2002) Phase-space transport of stochastic chaos in population dynamics of virus spread. Phys Rev Lett 88:234101

    Article  Google Scholar 

  • Coulson T, Rohani P, Pascual M (2004) Skeletons, noise and population growth: the end of an old debate? Trends Ecol Evol 19(7):359–364

    Article  Google Scholar 

  • Dykman MI, Mori E, Ross J, Hunt PM (1994) Large fluctuations and optimal paths in chemical-kinetics. J Chem Phys 100(8):5735–5750

    Article  Google Scholar 

  • Ebenman B, Jonsson T (2005) Using community viability analysis to identify fragile systems and keystone species. Trends Ecol Evol 20(10):568–575

    Article  Google Scholar 

  • Elf J, Ehrenberg M (2004) Spontaneous separation of bi-stable biochemical systems into spatial domains of opposite phases. Syst Biol 1(2):230–236

    Article  Google Scholar 

  • Elgart V, Kamenev A (2004) Rare event statistics in reaction–diffusion systems. Phys Rev E 70:041106

    Article  MathSciNet  Google Scholar 

  • Forgoston E, Bianco S, Shaw LB, Schwartz IB (2011) Maximal sensitive dependence and the optimal path to epidemic extinction. B Math Biol 73:495–514

    Article  MathSciNet  MATH  Google Scholar 

  • Gang H (1987) Stationary solution of master equations in the large-system-size limit. Phys Rev A 36(12):5782–5790

    Article  Google Scholar 

  • Gillespie D (1976) A general method for numerically simulating the stochastic time evolution of coupled chemical reactions. J Comput Phys 22(4):403–434

    Article  MathSciNet  Google Scholar 

  • Kessler DA, Shnerb NM (2007) Extinction rates for fluctuation-induced metastabilities: a real space WKB approach. J Stat Phys 127(5):861–886

    Article  MathSciNet  MATH  Google Scholar 

  • Kubo R, Matsuo K, Kitahara K (1973) Fluctuation and relaxation of macrovariables. J Stat Phys 9(1):51–96

    Article  Google Scholar 

  • Lande R (1993) Risks of population extinction from demographic and environmental stochasticity and random catastrophes. Am Nat 142(6):911–927

    Article  MathSciNet  Google Scholar 

  • Leigh EG (1981) The average lifetime of a population in a varying environment. J Theor Biol 90(2):213–239

    Article  MathSciNet  Google Scholar 

  • Lidicker WZ Jr (2010) The Allee effect: its history and future importance. Open Ecol J 3:71–82

    Article  Google Scholar 

  • Meerson B, Sasorov PV (2008) Noise-driven unlimited population growth. Phys Rev E 78:060103(R)

    Article  Google Scholar 

  • Rand DA, Wilson HB (1991) Chaotic stochasticity: —a ubiquitous source of unpredictability in epidemics. Proc R Soc B Biol Sci 246(1316):179–184

    Article  Google Scholar 

  • Samoilov M, Plyasunov S, Arkin AP (2005) Stochastic amplification and signaling in enzymatic futile cycles through noise-induced bistability with oscillations. Proc Natl Acad Sci USA 102(7):2310–2315

    Article  Google Scholar 

  • Schwartz IB, Forgoston E, Bianco S, Shaw LB (2011) Converging towards the optimal path to extinction. J R Soc Interface 8(65):1699–1707

    Article  Google Scholar 

  • Thomas CD, Cameron A, Green RE, Bakkenes M, Beaumont LJ, Collingham YC, Erasmus BFN, de Siqueira MF, Grainger A, Hannah L, Hughes L, Huntley B, van Jaarsveld AS, Midgley GF, Miles L, Ortega-Huerta MA, Peterson AT, Phillips OL, Williams SE (2004) Extinction risk from climate change. Nature 427:145–148

    Article  Google Scholar 

  • Tsimring LS (2014) Noise in biology. Rep Prog Phys 77(2):026601

    Article  Google Scholar 

  • van Kampen NG (2007) Stochastic processes in physics and chemistry. Elsevier, Amsterdam

    Google Scholar 

Download references

Acknowledgments

We gratefully acknowledge support from the National Science Foundation. G.N., L.B., and E.F. were supported by the National Science Foundation awards CMMI-1233397 and DMS-0959461. This material is based upon work while L.B. was serving at the National Science Foundation. Any opinion, findings, and conclusions or recommendations expressed in this material are those of the authors and do not necessarily reflect the views of the National Science Foundation. We also gratefully acknowledge Dirk Vanderklein and Andrew McDougall for helpful discussions.

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Correspondence to Eric Forgoston.

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Nieddu, G., Billings, L. & Forgoston, E. Analysis and Control of Pre-extinction Dynamics in Stochastic Populations. Bull Math Biol 76, 3122–3137 (2014). https://doi.org/10.1007/s11538-014-0047-3

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  • DOI: https://doi.org/10.1007/s11538-014-0047-3

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