Skip to main content

Advertisement

Log in

Occurrence and incidence of viruses infecting green beans in south-eastern Spain

  • Published:
European Journal of Plant Pathology Aims and scope Submit manuscript

Abstract

A study was conducted to determine the identity and prevalence of viruses in 455 greenhouses in the main Spanish green bean growing area. Directed surveys were conducted in 422 crops from 2000–2004 to collect samples from diseased plants displaying symptoms that could be attributed to viruses. The samples were analysed to detect any virus by means of dsRNA extraction, mechanical inoculation to test plants, as well as ELISA and/or RT-PCR tests to detect potyviruses, geminiviruses and viruses previously known to infect beans in Spain. Random surveys were conducted in the years 2002 and 2005 (in 21 and 12 greenhouses, respectively) to study the actual incidence of known viruses in the area. Symptoms were recorded in 23,108 plants from which 664 plants were collected and analysed by ELISA or RT-PCR. The results of the directed surveys showed that all the analyzed crops carried the cryptic virus Phaseolus vulgaris endornavirus (PVuV), whereas phytopathogenic viruses appeared in smaller percentages of the crops: Tomato yellow leaf curl virus (TYLCV) 20.4%, Southern bean mosaic virus (SBMV) 9.0%, Tomato spotted wilt virus (TSWV) 4.0%, and the new species Bean yellow disorder virus (BnYDV) that broke out in 2004 with occurrence values higher than 34.3% that year. From 2000–2004 an important decrease in TYLCV was observed, along with a slight increase in SBMV and a consistently low occurrence of TSWV. The results of the random surveys confirmed the increased occurrence of virus detected during the directed surveys, and furthermore demonstrated the percentage of incidence for each virus.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4

Similar content being viewed by others

References

  • Accotto, G. P., Navas-Castillo, J., Noris, E., Moriones, E., & Louro, D. (2000). Typing of tomato yellow leaf curl viruses in Europe. European Journal of Plant Pathology, 106, 179–186.

    Article  Google Scholar 

  • Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W., et al. (1997). Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Research, 25, 3389–3402.

    Article  PubMed  CAS  Google Scholar 

  • Badge, J., Brunt, A., Carson, R., Dagless, E., Karamagioli, M., Phillips, S., et al. (1996). A Carlavirus-specific PCR primer and partial nucleotide sequence provides further evidence for the recognition of Cowpea mild mottle virus as a whitefly-transmitted carlavirus. European Journal of Plant Pathology, 102, 305–310.

    Article  CAS  Google Scholar 

  • Best, R. J. (1968). Tomato spotted wilt virus. In K. M. Smith, & M. A. Lauffer (Eds.), Advanced virus research (vol. 13, (pp. 65–146)). New York: Academic.

    Google Scholar 

  • Brunt, A., Crabtree, K., Dallwitz, M., Gibbs, A., & Watson, L. (1996). Viruses of plants: Descriptions and lists from the VIDE database p. 1484. UK: CAB International.

    Google Scholar 

  • Choi, S. K., Choi, J. K., Park, W. M., & Ryu, K. H. (1999). RT-PCR detection and identification of three species of cucumoviruses with a genus-specific single pair of primers. Journal of Virological Methods, 83, 67–73.

    Article  PubMed  CAS  Google Scholar 

  • Fukuhara, T., Koga, R., Aoki, N., Yamamoto, N., Oyama, N., Udagawa, T., et al. (2006). The wide distribution of endornaviruses, large double-stranded RNA replicons with plasmid-like properties. Archives of Virology, 151, 995–1002.

    Article  PubMed  CAS  Google Scholar 

  • Gibbs, A., & Mackenzie, A. (1997). A primer pair for amplifying part of the genome of all potyvirids by RT-PCR. Journal of Virological Methods, 63, 9–16.

    Article  PubMed  CAS  Google Scholar 

  • Gibbs, M. J., Koga, D., Moriyama, H., Pfeiffer, P., & Fukuhara, T. (2000). Phylogenetic analysis of some large double-stranded RNA virus. Journal of General Virology, 81, 227–233.

    PubMed  CAS  Google Scholar 

  • Gibbs, M. J., Pfeiffer, P., & Fukuhara, T. (2004). Genus endornavirus. In C. M. Fauquet, M. A. Mayo, J. Maniloff, U. Desselberger, & L. A. Ball (Eds.), Virus taxonomy: Eighth report of the international committee on taxonomy of viruses (pp. 603–605). London: Elsevier.

    Google Scholar 

  • Hacker, C. V., Brasier, C. M., & Buck, K. W. (2005). A double-stranded RNA from a Phytophthora species is related to the plant endornaviruses and contains a putative UDP glycosiltransferase gene. Journal of General Virology, 86, 1561–1570.

    Article  PubMed  CAS  Google Scholar 

  • Hall, R. (1994). Compendium of bean diseases (2nd ed.). Minnesota, USA: APS.

    Google Scholar 

  • Ikeda, K., Nakamura, H., & Matsumoto, N. (2003). Hypovirulet strain of the violet root rot fungus Helicobasidium mompa. Journal of General Plant Pathology, 69, 385–390.

    Article  CAS  Google Scholar 

  • Lacasa, A., Torres, J., & Martinez, M. C. (1991). La implicación de Frankliniella occidentalis en la diseminación del virus del bronceado del tomate (TSWV) en los cultivos murcianos. Agricola-Vergel, 112, 203–209.

    Google Scholar 

  • Monci, F., García-Andrés, S., Maldonado, J. A., & Moriones, E. (2005). Resistance to monopartite begomoviruses associated with the bean leaf crumple disease in Phaseolus vulgaris controlled by a single dominant gene. Phytopathology, 95, 819–826.

    Article  PubMed  CAS  Google Scholar 

  • Monci, F., Sánchez-Campos, S., Navas-Castillo, J., & Moriones, E. (2002). A natural recombinant between the geminiviruses, Tomato yellow leaf curl Sadinia virus and Tomato yellow leaf curl virus exhibits a novel pathogenic phenotype and is becoming prevalent in Spanish populations. Virology, 303, 317–326.

    Article  PubMed  CAS  Google Scholar 

  • Navas-Castillo, J., Sánchez-Campos, S., & Diaz, J. A. (1999). Tomato yellow leaf curl virus-Is causes a novel disease of common bean and severe epidemics in tomato in Spain. Plant Disease, 83, 29–32.

    Article  Google Scholar 

  • Osaki, H., Nakamura, H., Sasaki, A., Matsumoto, N., & Yoshida, K. (2006). An endornavirus from a hypovirulent strain of the violet root rot fungus, Helicobasidium mompa. Virus Research, 18, 143–149.

    Article  CAS  Google Scholar 

  • Parrella, G., Gognalons, P., Gebre-Selassie, K., Vovlas, C., & Marchoux, G. (2003). An update of the host range of Tomato spotted wilt virus. Journal of Plant Pathology, 85, 227–264.

    Google Scholar 

  • Robertson, N. L., French, R., & Gray, S. M. (1991). Use of group-specific primers and the polymerase chain reaction for the detection and identification of luteoviruses. Journal of General Virology, 72, 1473–1477.

    Article  PubMed  CAS  Google Scholar 

  • Saiz, M., De-Blas, C., Carazo, G., Fresno, J., Romero, J., & Castro, S. (1995). Incidence and characterization of bean common mosaic virus isolates in Spanish bean fields. Plant Disease, 70, 79–81.

    Google Scholar 

  • Sambrook, J., Fritsch, E. F., & Maniatis, T. (1989). Molecular cloning: A laboratory manual. New York: Cold Spring Harbor Laboratory Press.

    Google Scholar 

  • Sanchez-Campos, S., Navas-Castillo, J., Monci, F., Díaz, J. A., & Moriones, E. (1999). Displacement of Tomato yellow leaf curl virus (TYLCV)-Sr by TYLCV-Is in tomato epidemics in Spain. Phytopathology, 89, 1038–1043.

    Article  PubMed  CAS  Google Scholar 

  • Segundo, E., Martín, G., Cuadrado, I. M., & Janssen, D. (2004a). A new yellowing disease in Phaseolus vulgaris associated with a whitefly-transmitted virus. Plant Pathology, 53, 517.

    Article  Google Scholar 

  • Segundo, E., Gil-Salas, F. M., Janssen, D., Martín, D., Cuadrado, I. M., & Remah, A. (2004b). First report of Southern bean mosaic virus infecting French bean in Morocco. Plant Disease, 88, 1162.

    Article  Google Scholar 

  • Sether, D. M., & De-Angelis, J. D. (1992). Tomato spotted wilt virus host list and bibliography. Agricultural Experiment Station, Special report 888 p. 16. Corvallis: Oregon State University.

    Google Scholar 

  • Thompson, J. D., Higgins, D. G., & Gibson, T. J. (1994). CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting positions specific gap penalties and weight matrix choice. Nucleic Acids Research, 22, 4673–4680.

    Article  PubMed  CAS  Google Scholar 

  • Valverde, R. A., Nameth, S. T., & Jordan, R. L. (1990). Analysis of double-stranded RNA for plant virus diagnosis. Plant Disease, 74, 255–258.

    Article  Google Scholar 

  • Verhoeven, J. T. J., Roenhorst, J. W., Lesemann, D. E., Segundo, E., Velasco, L., Ruiz, L., et al. (2003). Southern bean mosaic virus the causal agent of a new disease of Phaseolus vulgaris beans in Spain. European Journal of Plant Pathology, 109, 935–941.

    Article  CAS  Google Scholar 

  • Wakarchuk, D. A., & Hamilton, R. I. (1990). Partial nucleotide sequence from enigmatic dsRNAs in Phaseolus vulgaris. Plant Molecular Biology, 14, 637–639.

    Article  PubMed  CAS  Google Scholar 

  • Walters, H. J. (1969). Beetle transmission of plant viruses. Advances in Virus Research, 15, 339–363.

    Article  PubMed  CAS  Google Scholar 

  • Wyatt, S. D., & Brown, J. K. (1996). Detection of subgroup III geminivirus isolates in leaf extracts by degenerate primers and polymerase chain reaction. Phytopathology, 86, 1288–1293.

    Article  Google Scholar 

Download references

Acknowledgement

This work was partially supported with project PA 12.01. Pinto and black velvet beans were kindly supplied by José Antonio Maldonado (Seminis). We wish to thank Antonia Belmonte for her excellent technical assistance. We also wish to thank Christopher Hanson for revising the English text.

Open Access

This article is distributed under the terms of the Creative Commons Attribution Noncommercial License which permits any noncommercial use, distribution, and reproduction in any medium, provided the original author(s) and source are credited.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Eduardo Segundo.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Segundo, E., Carmona, M.P., Sáez, E. et al. Occurrence and incidence of viruses infecting green beans in south-eastern Spain. Eur J Plant Pathol 122, 579–591 (2008). https://doi.org/10.1007/s10658-008-9328-8

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10658-008-9328-8

Keywords

Navigation