Abstract
Vertical distribution of bacterial communities was detected in high arsenic (As) sediments in a representative high As area in Inner Mongolia. Nineteen sediment samples were collected from a 30 m borehole and detected by geochemistry and molecular ecological approaches including polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE), 16S rRNA gene clone library and 454 pyrosequencing. As contents ranged from 42.1 to 111.3 mg kg−1 which fluctuated with different depth and significantly high in clay and mild clay sediment samples at depth of 8, 20, 25 and 28 m respectively. The ratios of As(III) to total As generally increased with depth but As(V) dominated in all sediment samples. High concentrations of total As, sulfur, iron and total organic carbon were generally found in clay and low in sand samples. Both DGGE patterns and 454 pyrosequencing results indicated that bacterial communities dynamically diversified with increasing depth and were dominated by Firmicutes, Bacteroidetes, Proteobacteria and Chloroflexi. Most of the sediment samples were dominated by populations including Sporosarcina, Acinetobacter, Pseudomonas, Halomonas, Polaromonas, Paenibacillus and Flavobacterium. These populations were found with high similarities with those microbes capable of denitrification, sulfur oxidation, organic matter degradation and As resistance and reduction. These results implied that microbes might play an important role in As mobilization in the shallow aquifers of Hetao Plain, Inner Mongolia.
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Achal V, Pan X, Fu Q, Zhang D (2012) Biomineralization based remediation of As(III) contaminated soil by Sporosarcina ginsengisoli. J Hazard Mater 201:178–184
Achour AR, Bauda P, Billard P (2007) Diversity of arsenite transporter genes from arsenic-resistant soil bacteria. Res Microbiol 158:128–137
Anawar HM, Akai J, Mihaljevič M, Sikder AM, Ahmed G, Tareq SM, Rahman MM (2011) Arsenic contamination in groundwater of Bangladesh: perspectives on geochemical, microbial and anthropogenic issues. Water 3:1050–1076
Barringer JL, Mumford A, Young LY, Reilly PA, Bonin JL, Rosman R (2010) Pathways for arsenic from sediments to groundwater to streams: biogeochemical processes in the Inner Coastal Plain, New Jersey, USA. Water Res 44:5532–5544
Brammer H, Ravenscroft P (2009) Arsenic in groundwater: a threat to sustainable agriculture in South and South-east Asia. Environ Int 35:647–654
Chauhan VS, Nickson R, Chauhan D, Iyengar L, Sankararamakrishnan N (2009) Ground water geochemistry of Ballia district, Uttar Pradesh, India and mechanism of arsenic release. Chemosphere 75:83–91
Deng Y (2008) Geochemical processes of high arsenic groundwater system at western Hetao Basin. PhD Thesis. China University of Geosciences, Wuhan
Deng Y, Wang Y, Ma T (2009a) Isotope and minor element geochemistry of high arsenic groundwater from Hangjinhouqi, the Hetao Plain, Inner Mongolia. Appl Geochem 24:587–599
Deng Y, Wang Y, Ma T, Gan Y (2009b) Speciation and enrichment of arsenic in strongly reducing shallow aquifers at western Hetao Plain, northern China. Environ Geol 56:1467–1477
Ferreccio C, Sancha AM (2011) Arsenic exposure and its impact on health in Chile. J Health Popul Nutr 24:164–175
Fisher JC, Wallschläger D, Planer-Friedrich B, Hollibaugh JT (2007) A new role for sulfur in arsenic cycling. Environ Sci Technol 42:81–85
Guo H, Yang S, Tang X, Li Y, Shen Z (2008) Groundwater geochemistry and its implications for arsenic mobilization in shallow aquifers of the Hetao Basin, Inner Mongolia. Sci Total Environ 393:131–144
Guo H, Zhang B, Wang G, Shen Z (2010) Geochemical controls on arsenic and rare earth elements approximately along a groundwater flow path in the shallow aquifer of the Hetao Basin, Inner Mongolia. Chem Geol 270:117–125
Hoshino T, Terahara T, Tsuneda S, Hirata A, Inamori Y (2005) Molecular analysis of microbial population transition associated with the start of denitrification in a wastewater treatment process. J Appl Microbiol 99:1165–1175
Hu LG, Cai Y (2009) Biogeochemistry of arsenic. Prog Chem (Chin J) 21:458–466
Inagaki F, Takai K, Kobayashi H, Nealson KH, Horikoshi K (2003) Sulfurimonas autotrophica gen. nov., sp. nov., a novel sulfur-oxidizing ε-proteobacterium isolated from hydrothermal sediments in the Mid-Okinawa Trough. Int J Syst Evol Microbiol 53:1801–1805
Ishii S, Yamamoto M, Kikuchi M, Oshima K, Hattori M, Otsuka S, Senoo K (2009) Microbial populations responsive to denitrification-inducing conditions in rice paddy soil, as revealed by comparative 16S rRNA gene analysis. Appl Environ Microbiol 75:7070–7078
Islam FS, Gault AG, Boothman C, Polya DA, Charnock JM, Chatterjee D, Lloyd JR (2004) Role of metal-reducing bacteria in arsenic release from Bengal delta sediments. Nature 430:68–71
Jiang Z, Li P, Wang Y, Li B, Deng Y, Wang Y (2014) Vertical distribution of bacterial populations associated with arsenic mobilization in aquifer sediments from the Hetao plain, Inner Mongolia. Environ Earth Sci. 71:311–318
Khan NI, Owens G, Bruce D, Naidu R (2009) Human arsenic exposure and risk assessment at the landscape level: a review. Environ Geochem Health 31:143–166
Kniemeyer O, Probian C, Rosselló-Mora R, Harder J (1999) Anaerobic mineralization of quaternary carbon atoms: isolation of denitrifying bacteria on dimethylmalonate. Appl Environ Microbiol 65:3319–3324
Li P, Wang Y, Liu K, Tong L (2010) Bacterial community structure and diversity during establishment of an anaerobic bioreactor to treat swine wastewater. Water Sci Technol 61:243–252
Li P, Wang Y, Jiang Z, Jiang H, Li B, Dong H, Wang Y (2013) Microbial diversity in high arsenic groundwater in Hetao Basin of Inner Mongolia, China. Geomicrobiol J 30:897–909
Liao VHC, Chu YJ, Su YC, Hsiao SY, Wei CC, Liu CW, Liao CM, Shen WC, Chang FJ (2011) Arsenite-oxidizing and arsenate-reducing bacteria associated with arsenic-rich groundwater in Taiwan. J Contam Hydrol 123:20–29
Luo T, Hu S, Cui J, Tian H, Jing C (2012) Comparison of arsenic geochemical evolution in the Datong Basin (Shanxi) and Hetao Basin (Inner Mongolia), China. Appl Geochem 27:2315–2323
Marchesi JR, Sato T, Weightman AJ, Martin TA, Fry JC, Hiom SJ, Wade WG (1998) Design and evaluation of useful bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA. Appl Environ Microbiol 64:795–799
Mumford AC, Barringer JL, Benzel WM, Reilly PA, Young LY (2012) Microbial transformations of arsenic: mobilization from glauconitic sediments to water. Water Res 46:2859–2868
Muyzer G, De Waal EC, Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59:695–700
Nickson RT, McArthur JM, Ravenscroft P, Burgess WG, Ahmed KM (2000) Mechanism of arsenic release to groundwater, Bangladesh and West Bengal. Appl Geochem 15:403–413
Oremland RS, Stolz JF (2003) The ecology of arsenic. Science 300:939–944
Osborne TH, Jamieson HE, Hudson-Edwards KA, Nordstrom DK, Walker SR, Ward SA, Santini JM (2010) Microbial oxidation of arsenite in a subarctic environment: diversity of arsenite oxidase genes and identification of a psychrotolerant arsenite oxidiser. BMC Microbiol 10:205
Pepi M, Protano G, Ruta M, Nicolardi V, Bernardini E, Focardi S, Gaggi C (2011) Arsenic-resistant Pseudomonas spp. and Bacillus sp. bacterial strains reducing As (V) to As (III), isolated from Alps soils, Italy. Folia Microbiol 56:29–35
Peters SC, Blum JD, Klaue B, Karagas MR (1999) Arsenic occurrence in New Hampshire drinking water. Environ Sci Technol 33:1328–1333
Ruiz-Chancho M, López-Sánchez J, Rubio R (2007) Analytical speciation as a tool to assess arsenic behaviour in soils polluted by mining. Anal Bioanal Chem 387:627–635
Shivaji S, Reddy G, Aduri R, Kutty R, Ravenschlag K (2004) Bacterial diversity of a soil sample from Schirmacher Oasis, Antarctica. Cell Mol Biol 50:525–536
Tanner MA, Shoskes D, Shahed A, Pace NR (1999) Prevalence of corynebacterial 16S rRNA sequences in patients with bacterial and “nonbacterial” prostatitis. J Clin Microbiol 37:1863–1870
Tedersoo L, Nilsson RH, Abarenkov K, Jairus T, Sadam A, Saar I, Bahram M, Bechem E, Chuyong G, Kõljalg U (2010) 454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases. New Phytol 188:291–301
Thompson JR, Marcelino LA, Polz MF (2002) Heteroduplexes in mixed-template amplifications: formation, consequence and elimination by ‘reconditioning PCR’. Nucleic Acids Res 30:2083–2088
Vanloosdrecht MCM, Lyklema J, Norde W, Zehnder AJB (1990) Influence of interfaces on microbial activity. Microbiol Rev 54:75–87
Wang Y, Li P, Li B, Webster G, Weightman AJ, Jiang Z, Jiang D, Deng Y, Wang Y (2014) Bacterial diversity and community structure in high arsenic aquifers in Hetao Plain of Inner Mongolia, China. Geomicrobiol J. 31:338–349
Webster G, Newberry CJ, Fry JC, Weightman AJ (2003) Assessment of bacterial community structure in the deep sub-seafloor biosphere by 16S rDNA-based techniques: a cautionary tale. J Microbiol Methods 55:155–164
Winkel LH, Trang PTK, Lan VM, Stengel C, Amini M, Ha NT, Viet PH, Berg M (2011) Arsenic pollution of groundwater in Vietnam exacerbated by deep aquifer exploitation for more than a century. Proc Natl Acad Sci 108:1246–1251
Yagi JM, Sims D, Brettin T, Bruce D, Madsen EL (2009) The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar-contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer. Environ Microbiol 11:2253–2270
Yuan C, Jiang G, He B (2005) Evaluation of the extraction methods for arsenic speciation in rice straw, Oryza sativa L., and analysis by HPLC-HG-AFS. J Anal At Spectrom 20:103–110
Zhang H, Ma D, Hu X (2002) Arsenic pollution in groundwater from Hetao Area, China. Environ Geol 41:638–643
Zhang LM, Liu F, Tan WF, Feng XH, Zhu YG, He J (2008) Microbial DNA extraction and analyses of soil iron–manganese nodules. Soil Biol Biochem 40:1364–1369
Zhou W, Fang J (2008) Determination of total sulphur in sludge by ICP-AES using microwave digestion. Anal Instrum 2:18–20
Zhou J, Wu L, Deng Y, Zhi X, Jiang YH, Tu Q, Xie J, Van Nostrand JD, He Z, Yang Y (2011) Reproducibility and quantitation of amplicon sequencing-based detection. ISME J 5:1303–1313
Zobrist J, Dowdle PR, Davis JA, Oremland RS (2000) Mobilization of arsenite by dissimilatory reduction of adsorbed arsenate. Environ Sci Technol 34:4747–4753
Acknowledgments
This research was financially supported by National Natural Science Foundation of China (Grant No. 41372348, 41120124003), National Science Foundation for Post-doctoral Scientists of China (Grant No. 2012M521491, 2013T60757) and the Fundamental Research Funds for the Central Universities, China University of Geosciences (Wuhan) (Grant No.CUG140505 and GBL11204).
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Wang, Y., Li, P., Jiang, D. et al. Vertical distribution of bacterial communities in high arsenic sediments of Hetao Plain, Inner Mongolia. Ecotoxicology 23, 1890–1899 (2014). https://doi.org/10.1007/s10646-014-1322-7
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DOI: https://doi.org/10.1007/s10646-014-1322-7