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Rice necrosis mosaic virus, a fungal transmitted Bymovirus: complete nucleotide sequence of the genomic RNAs and subgrouping of bymoviruses

  • Viral and Viroid Diseases
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Abstract

The complete nucleotide sequence of Rice necrosis mosaic virus (RNMV) RNA1 was determined to be 7178 nt long with one large open reading frame, potentially encoding a polyprotein of 258 kDa with the features of a typical bymovirus. The nucleotide sequence showed 56 % identity with that of Barley mild mosaic virus (BaMMV) and 46 % with those of Oat mosaic virus, Barley yellow mosaic virus and Wheat yellow mosaic virus. RNA2 was 3579 nt long, encoding a 110-kDa polyprotein, and showed 42 and 35/26 % identity with BaMMV and others, respectively. Phylogenetic analysis showed that bymoviruses were classified into two subgroups.

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Acknowledgments

We are grateful to D. Murphy for checking the English in the manuscript. We also thank Drs. T. Idei and S. Fujii for information on RNMV. This work was supported in part by the Program for Promotion of Basic and Applied Researches in Bio-oriented Industry and Science; the Technology Research Promotion Program for Agriculture, Forestry, Fisheries and Food Industry; and the Ministry of Education, Culture, Sports, Science and Technology of Japan (Grant-in-Aid for Scientific Research for Scientific Research (C), no. 24580065) to MN and (B), no. 26292026 to KK.

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Authors and Affiliations

  1. The United Graduate School of Agricultural Sciences, Ehime University, Matsuyama, Ehime, 790-8566, Japan

    S. G. Wagh

  2. Faculty of Agriculture, Ehime University, Matsuyama, Ehime, 790-8566, Japan

    K. Kobayashi, T. Yaeno, N. Yamaoka & M. Nishiguchi

  3. Graduate School of Agriculture, Hokkaido University, Kita 8, Nishi 5, Kita-ku, Sapporo, Hokkaido, 060-8589, Japan

    C. Masuta

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  1. S. G. Wagh
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  2. K. Kobayashi
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  3. T. Yaeno
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  4. N. Yamaoka
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  5. C. Masuta
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  6. M. Nishiguchi
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Corresponding author

Correspondence to M. Nishiguchi.

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Supplementary material 1: Table S1 List of primers (DOC 57 kb)

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Wagh, S.G., Kobayashi, K., Yaeno, T. et al. Rice necrosis mosaic virus, a fungal transmitted Bymovirus: complete nucleotide sequence of the genomic RNAs and subgrouping of bymoviruses. J Gen Plant Pathol 82, 38–42 (2016). https://doi.org/10.1007/s10327-015-0618-7

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  • DOI: https://doi.org/10.1007/s10327-015-0618-7

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