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The crystal structure of ilinskite, NaCu5O2(SeO3)2Cl3, and review of mixed-ligand CuOmCln coordination geometries in minerals and inorganic compounds

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Abstract

The crystal structure of ilinskite, NaCu5O2(SeO3)2Cl3, a rare copper selenite chloride from volcanic fumaroles of the Great fissure Tolbachik eruption (Kamchatka peninsula, Russia), has been solved by direct methods and refined to R 1 = 0.044 on the basis of 2720 unique observed reflections. The mineral is orthorhombic, Pnma, a = 17.769(7), b = 6.448(3), c = 10.522(4) Å, V = 1205.6(8) Å3, Z = 4. The The CuOmCln coordination polyhedra share edges to form tetramers that have 'additional' O1 and O2 atoms as centers. The O1Cu4 and O2Cu4 tetrahedra share common Cu atoms to form [O2Cu5]6+ sheets. The SeO3 groups and Cl atoms are adjacent to the [O2Cu5]6+ sheets to form complex layers parallel to (100). The Na+ cations are located in between the layers. A review of mixed-ligand CuOmCln coordination polyhedra in minerals and inorganic compounds is given. There are in total 26 stereochemically different mixed-ligand Cu-O-Cl coordinations.

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References

  • Abrahams SC, Williams HJ (1963) Antiferromagnetic and crystal structure of lithium cupric chloride dihydrate. J Chem Phys 39:2923–2933

    Article  Google Scholar 

  • Bachmann HG, Zemann J (1961) Die Kristallstruktur von Linarit, PbCuSO4(OH)2. Acta Crystallogr 14:747–753

    Article  Google Scholar 

  • Becker R, Berger H, Johnsson M (2007) Monoclinic Cu3(SeO3)2Cl2: an oxohalide with an unusual CuO4Cl trigonal-bipyramidal coordination. Acta Crystallogr C63:i4–i6

    Google Scholar 

  • Berdonosov PS, Olenev AV, Dolgikh VA (2009) Strontium - copper selenite - chlorides: synthesis and structural investigation. J Solid State Chem 182:2368–2373

    Article  Google Scholar 

  • Berlepsch P, Armbruster T, Brugger J, Bykova EY, Kartashov PM (1999) The crystal structure of vergasovaite Cu3O[(Mo, S)O4SO4] and its relation to synthetic Cu3O[MoO4]2. Eur J Mineral 11:101–110

    Google Scholar 

  • Brown ID, Altermatt D (1985) Bond-valence parameters obtained from a systematic analysis of the Inorganic Crystal Structure Databse. Acta Crystallogr B41:244–247

    Google Scholar 

  • Brownstein S, Han NF, Gabe EJ, le Page Y (1989) A redetermination of the crystal structure of cupric chloride dihydrate. Z Kristallogr 189:13–15

    Article  Google Scholar 

  • Burns PC, Hawthorne FC (1995a) Coordination-geometry pathways in Cu2+ oxysalt minerals. Can Mineral 33:889–905

    Google Scholar 

  • Burns PC, Hawthorne FC (1995b) Mixed-ligand Cu2+Φ6 octahedra in minerals: observed stereochemistries and HartreFock calculations. Can Mineral 33:1177–1188

    Google Scholar 

  • Burns PC, Krivovichev SV, Filatov SK (2002) New Cu2+ coordination polyhedra in the crystal structure of burnsite, KCdCu7O2(SeO3)2Cl9. Can Mineral 40:1587–1595

    Article  Google Scholar 

  • Chevrier G, Giester G, Zemann J (1993) Neutron refinements of sodium copper hydronium sulfate NaCu2(H3O2)(SO4)2 and rubidium copper hydronium selenate RbCu2(H3O2)(SeO4)2: variation of the hydrogen bond system in the natrochalcite-type series. Z Kristallogr 206:7–14

    Article  Google Scholar 

  • Eby RK, Hawthorne FC (1993) Structural relations in copper oxysalt minerals. I. Structural hierarchy. Acta Crystallogr B49:28–56

    Google Scholar 

  • Effenberger H (1984) Verfeinerung der Kristallstruktur von Kupfer(II)hydroxichlorid, Cu(OH)Cl. Monatsh Chem 115:725–730

    Article  Google Scholar 

  • Effenberger H (1985) Cu2O(SO4), dolerophanite: refinement of the crystal structure with a comparison of OCu(II)4 tetrahedra in inorganic compounds. Monatsh Chem 116:927–931

    Article  Google Scholar 

  • Effenberger H (1988) Contribution to the stereochemistry of copper. The transition from a tetragonal pyramidal to a trigonal bipyramidal Cu(II)O5 coordination figure with a structure determination of PbCu2(SeO3)3. J Solid State Chem 73:118–126

    Article  Google Scholar 

  • Effenberger H, Zemann J (1984) The crystal structure of caratiite. Mineral Mag 48:541–546

    Article  Google Scholar 

  • Filatov SK, Vergasova LP (1989) On the discreditation of caratiite and priority of piypite. Zap Vses Mineral Obshch 118(3):88–90 (in Russian)

    Google Scholar 

  • Filatov SK, Semenova TF, Vergasova LP (1992) Types of polymerization of [OCu4]6+ tetrahedra in compounds with additional oxygen atoms. Dokl Akad Nauk 322:536–539 (in Russian)

    Google Scholar 

  • Gattow G, Zemann J (1958) Neubestimmung der Kristallstruktur von Azurit, Cu3(OH)2(CO3)2. Acta Crystallogr 11:866–872

    Article  Google Scholar 

  • Giacovazzo C, Scandale E, Scordari F (1976) The crystal structure of chlorothionite CuK2Cl2SO4. Z Kristallogr 144:226–237

    Article  Google Scholar 

  • Giester G, Zemann J (1987) The crystal structure of the natrochalcite-type compounds Me+Cu2(OH)(ZO4)2·H2O [Me+=Na, K, Rb; Z=S, Se], with special reference to the hydrogen bonds. Z Kristallogr 179:431–442

    Article  Google Scholar 

  • Gorskaya MG, Filatov SK, Rozhdestvenskaya IV, Vergasova LP (1992) The crystal structure of klyuchevskite, K3Cu3(Fe, Al)O2(SO4)4, new mineral from volcanic sublimates. Mineral Mag 56:411–416

    Article  Google Scholar 

  • Harrison WTA, Johnston MG (2000) Syntheses and structures of two selenite chloride hydrates: Co(HSeO3)Cl.3(H2O) and Cu(HSeO3)Cl.2(H2O). Z Anorg Allg Chem 626:2487–2490

    Article  Google Scholar 

  • Hawthorne FC, Kimata M, Eby RK (1993) The crystal structure of spangolite, a complex copper sulfate sheet mineral. Am Mineral 78:649–652

    Google Scholar 

  • Hawthorne FC, Cooper MA, Grice JD, Roberts AC, Hubbard N (2002) Description and crystal structure of bobkingite, Cu2+ 5Cl2(OH)8(H2O)2, a new mineral from New Cliffe Hill Quarry, Stanton-under-Bardon, Leicestershire, UK. Mineral Mag 66:301–311

    Article  Google Scholar 

  • Huang Q, Hwu SJ (2003) The fascinating noncentrosymmetric copper(II) phosphates synthesized via CsCl salt-inclusion. Inorg Chem 42:655–657

    Article  Google Scholar 

  • Jahn HA, Teller E (1937) Stability of polyatomic molecules in degenerate electronic states. I. Orbital degeneracy. Proc Roy Soc A161:220–235

    Google Scholar 

  • Kahlenberg V (2004) On the crystal structure of K2Cu5Cl8(OH)4 .2(H2O). Z Anorg Allg Chem 630:900–903

    Article  Google Scholar 

  • Krivovichev SV, Filatov SK (1999) Structural principles for minerals and inorganic compounds containing anion-centered tetrahedra. Am Mineral 84:1099–1106

    Google Scholar 

  • Krivovichev SV, Filatov SK, Semenova TF (1998a) Types of cationic complexes based on oxo-centered tetrahedra [OM4] in crystal structures of inorganic compounds. Russ Chem Rev 67:137–155

    Article  Google Scholar 

  • Krivovichev SV, Filatov SK, Semenova TF, Rozhdestvenskaya IV (1998b) Crystal chemistry of inorganic compounds based on chains of oxocentered tetrahedra. I. Crystal structure of chloromenite, Cu9O2(SeO3)4Cl6. Z Kristallogr 213:645–649

    Article  Google Scholar 

  • Krivovichev SV, Shuvalov RR, Semenova TF, Filatov SK (1999a) Crystal chemistry of inorganic compounds based on chains of oxocentered tetrahedra. III. Crystal structure of georgbokiite, Cu5O2(SeO3)2Cl2. Z Kristallogr 214:135–138

    Article  Google Scholar 

  • Krivovichev SV, Starova GL, Filatov SK (1999b) “Face-to-face” relationships between oxocentered tetrahedra and cation-centered tetrahedral oxyanions in crystal structures of minerals and inorganic compounds. Mineral Mag 63:263–266

    Google Scholar 

  • Krivovichev SV, Vergasova LP, Starova GL, Filatov SK, Britvin SN, Roberts AC, Steele IM (2002a) Burnsite, KCdCu7O2(SeO3)2Cl9, a new mineral species from the Tolbachik Volcano, Kamchatka Peninsula, Russia. Can Mineral 40:1171–1175

    Article  Google Scholar 

  • Krivovichev SV, Filatov SK, Burns PC (2002b) The cuprite-like framework of OCu4 tetrahedra in the crystal structure of synthetic melanothallite, Cu2OCl2, and its negative thermal expansion. Can Mineral 40:1185–1190

    Article  Google Scholar 

  • Krivovichev SV, Filatov SK, Armbruster T, Pankratova OY (2004) Crystal structure of Cu(I)Cu(II)4O(SeO3)Cl5 - a new mixed-valence copper(I/II) compound. Dokl Akad Nauk 399:356–358 (in Russian)

    Google Scholar 

  • Krivovichev SV, Filatov SK, Burns PC, Vergasova LP (2006) The crystal structure of allochalcoselite, Cu+Cu2+ 5PbO2(SeO3)2Cl5, a mineral with well-defined Cu+ and Cu2+ positions. Can Mineral 44:507–514

    Article  Google Scholar 

  • Krivovichev SV, Filatov SK, Burns PC, Vergasova LP (2007) The crystal structure of parageorgbookiite, β-Cu5O2(SeO3)2Cl2. Can Mineral 45:929–934

    Article  Google Scholar 

  • Krivovichev SV, Filatov SK, Cherepansky PN (2009) The crystal structure of alumoklyuchevskite, K3Cu3AlO2(SO4)4. Geol Ore Dep 51:656–662

    Article  Google Scholar 

  • Malcherek T, Schlueter J (2009) Structures of the pseudo-trigonal polymorphs of Cu2(OH)3Cl. Acta Crystallogr B65:334–341

    Google Scholar 

  • Millet P, Bastide B, Johnsson M (2000) Cu3(SeO3)2Cl2: a new oxochloride of copper(II) and selenium(IV). Solid State Comm 113:719–723

    Article  Google Scholar 

  • Parise JB, Hyde BG (1986) The structure of atacamite and its relationships to spinel. Acta Crystallogr B42:1277–1280

    Google Scholar 

  • Pertlik F, Zemann J (1988a) The crystal structure of nabokoite, Cu7TeO4(SO4)5 KCl: the first example of a Te(IV)O4 pyramid with exactly tetragonal symmetry. Mineral Petrol 38:291–298

    Article  Google Scholar 

  • Pertlik F, Zemann J (1988b) The crystal structure of copper hydroxide tellurite sulfate [Cu7(OH)6(TeO3)2(SO4)2]. Monatsh Chem 119:311–317

    Article  Google Scholar 

  • Queen WL, West JP, Hwu SJ, VanDerveer DG, Zarzyczny MC, Pavlick RA (2008) The versatile chemistry and noncentrosymmetric crystal structures of salt-inclusion vanadate hybrids. Angew Chem Int Ed 47:3791–3794

    Article  Google Scholar 

  • Scordari F, Stasi F (1990) The crystal structure of euchlorin, NaKCu3O(SO4)3. Neues Jb Mineral Abh 161:241–253

    Google Scholar 

  • Semenova TF, Rozhdestvenskaya IV, Filatov SK, Vergasova LP (1989) Crystal structure of the new mineral ponomarevite, K4Cu4OCl10. Dokl Akad Nauk SSSR 304:427–430 (in Russian)

    Google Scholar 

  • Sheldrick GM (2008) A short history of SHELX. Acta Crystallogr A64:112–122

    Google Scholar 

  • Shuvalov RR, Semenova TF, Filatov SK, Bannova II (1995) The crystal structure of new compound NaCu5O2(SeO3)2Cl3. In: VIIth Meet Crystal Chem Inorg Coord Compds, Conf Abstr, St. Petersburg 27-30 June 1995, p 26

  • Siidra OI, Krivovichev SV, Armbruster T, Filatov SK, Pekov IV (2007) The crystal structure of leningradite, PbCu3(VO4)2Cl2. Can Mineral 45:445–449

    Article  Google Scholar 

  • Siidra OI, Krivovichev SV, Turner RW, Rumsey MS (2008) Chloroxiphite Pb3CuO2(OH)2Cl2: structure refinement and description of oxocentred OPb4 tetrahedra. Mineral Mag 72:793–798

    Article  Google Scholar 

  • Starova GL, Filatov SK, Fundamensky VS, Vergasova LP (1991) The crystal structure of fedotovite, K2Cu3O(SO4)3. Mineral Mag 55:613–616

    Article  Google Scholar 

  • Starova GL, Krivovichev SV, Fundamenskii VS, Filatov SK (1997) The crystal structure of averievite, Cu5O2(VO4)2 .MX: comparison with related compounds. Mineral Mag 61:441–446

    Article  Google Scholar 

  • Starova GL, Krivovichev SV, Filatov SK (1998) Crystal chemistry of inorganic compounds based on chains of oxocentered tetrahedra. II. Crystal structure of Cu4O2((As, V)O4)Cl. Z Kristallogr 213:650–653

    Article  Google Scholar 

  • Takagi R, Duc F, Johnsson M (2006a) MoCu3TeO7Cl2 .0.5H2O. Acta Crystallogr C62:i16–i18

    Google Scholar 

  • Takagi R, Johnsson M, Gnezdilov V, Kremer RK, Brenig W, Lemmens P (2006b) Investigation of the oxohalide Cu4Te5O12Cl4 with weakly coupled Cu(II) tetrahedra. Phys Rev B74:014413

    Google Scholar 

  • Varaksina TV, Fundamenskii VS, Filatov SK, Vergasova LP (1990) The crystal structure of kamchatkite, a new naturally occuring oxychloride sulphate of potassium and copper. Mineral Mag 54:613–616

    Article  Google Scholar 

  • Vergasova LP, Semenova TF, Shuvalov RR, Filatov SK, Ananieev VV (1997) Ilinskite, NaCu5O2(SeO3)2Cl3 – a new mineral of volcanic exhalations. Dokl Akad Nauk SSSR 353:641–644 (in Russian)

    Google Scholar 

  • Vergasova LP, Semenova TF, Filatov SK, Krivovichev SV, Shuvalov RR, Ananiev VV (1999a) Georgbokiite Cu5O2(SeO3)2Cl2 – a new mineral from volcanic sublimates. Dokl Akad Nauk SSSR 364:527–531

    Google Scholar 

  • Vergasova LP, Krivovichev SV, Semenova TF, Filatov SK, Ananiev VV (1999b) Chloromenite, Cu9O2(SeO3)4Cl6, a new mineral from the Tolbachik volcano, Kamchatka, Russia. Eur J Mineral 11:119–123

    Google Scholar 

  • Vogt W, Haas H (1971) Kristallstruktur und Kernmagnetische Resonanz von Cs3Cu2Cl7(H2O)2. Acta Crystallogr B27:1528–1532

    Google Scholar 

  • Zemann J (1961) Die Kristallchemie des Kupfer. Fortschr Mineral 39:59–68

    Google Scholar 

  • Zemann J (1978) Geometrical and electrostatic comparison of the copper(2+) oxide structure type with the monoplatinum(2+) sulfide and sodium chloride structure types. Can Mineral 16:495–499

    Google Scholar 

  • Zemann A, Zemann J (1962) Die Kristallstruktur von Teineit – ein Beispiel fur die Korrektur einer chemischen Formel auf Grund der Strukturbestimmung. Acta Crystallogr 15:698–702

    Article  Google Scholar 

  • Zhang D, Johnsson M, Kremer RK (2010a) Two new layered oxohalides in the system Cu-Yb-Te-O-Cl. Solid State Sci 12:536–540

    Article  Google Scholar 

  • Zhang D, Berger H, Kremer RK, Wulferding D, Lemmens P, Johnsson M (2010b) Synthesis, crystal structure, and magnetic properties of the copper selenite chloride Cu5(SeO3)4Cl2. Inorg Chem 49:9683–9688

    Article  Google Scholar 

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Acknowledgments

We thank Francesco Demartin, an anonymous referee, and the Guest Editor Herta Effenberger for useful comments and corrections that improved the manuscript. This work was supported by the Russian Federal Grant-in-Aid to SVK (state contracts 16.740.11.0490 and 16.518.11.7096) and St. Petersburg State University internal grant # 3.38.83.2012. The X-ray diffraction facilities were provided through SPbSU X-ray Diffraction Resource Centre.

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Correspondence to Sergey V. Krivovichev.

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Editorial handling: H. Effenberger

Dedicated to Prof. Dr. Josef Zemann on the occassion of his 90th birthday

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Krivovichev, S.V., Filatov, S.K. & Vergasova, L.P. The crystal structure of ilinskite, NaCu5O2(SeO3)2Cl3, and review of mixed-ligand CuOmCln coordination geometries in minerals and inorganic compounds. Miner Petrol 107, 235–242 (2013). https://doi.org/10.1007/s00710-012-0238-2

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