Abstract
Pakistan harbors 16 major ethnic groups including Punjabis (56% of total population) and Kashmiri (6% of total population). Here, we report data of 17 Y-chromosomal short tandem repeats (Y-STRs) genotyped with the AmpFlSTR Y-filer™ PCR Amplification kit in 94 Punjabis and 101 Kashmiris. The estimated haplotype diversity was higher in Punjabis (0.996) than that in Kashmiris (0.983). Furthermore, we performed population genetic analyses by including data from six other Pakistani groups. The presented haplotype data were recently included in the Y-Chromosome Haplotype Reference Database (YHRD) for future forensic and other usage.
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References
Ahmad PI (2003) A Handbook on Azad Jammu & Kashmir
Gandhi R (2013) Punjab: a history from Aurangzeb to Mountbatten. Aleph Book Company, New Delhi
Mulero JJ, Chang CW, Calandro LM et al (2006) Development and validation of the AmpFlSTR Yfiler PCR amplification kit: a male specific, single amplification 17 Y-STR multiplex system. J Forensic Sci 51:64–75
Excoffier L, Lischer HEL (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10:564–567
Lee EY, Shin K-J, Rakha A et al (2014) Analysis of 22 Y chromosomal STR haplotypes and Y haplogroup distribution in Pathans of Pakistan. Forensic Sci Int Genet 11:111–116
Perveen R, Rahman Z, Shahzad MS, et al (2013) Y-STR haplotype diversity in Punjabi population of Pakistan. Forensic Sci Int Genet
Ali N, Coulson-Thomas YM, Norton AL et al (2013) Announcement of population data: genetic data for 17 Y-STR AmpFℓSTR® Yfiler™ markers from an immigrant Pakistani population in the UK (British Pakistanis). Forensic Sci Int Genet 7:e40–e42
Ballard DJ, Phillips C, Wright G et al (2005) A study of mutation rates and the characterisation of intermediate, null and duplicated alleles for 13 Y chromosome STRs. Forensic Sci Int 155:65–70
Acknowledgements
This study was financially supported by the Erasmus MC University Medical Center Rotterdam and Higher Education Commission of Pakistan Grant No. 20-2736/NRPU/R&D/HEC/12.
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Blood samples were collected from unrelated individuals of known ethnic origin and family history with informed consent, after approval by the ethical review committee of the University of Health Sciences, Lahore.
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Adnan, A., Rakha, A., Noor, A. et al. Population data of 17 Y-STRs (Yfiler) from Punjabis and Kashmiris of Pakistan. Int J Legal Med 132, 137–138 (2018). https://doi.org/10.1007/s00414-017-1611-9
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DOI: https://doi.org/10.1007/s00414-017-1611-9