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Abiotic and biotic controls of cryptobenthic fish assemblages across a Caribbean seascape

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Abstract

The majority of fish studies on coral reefs consider only non-cryptic species and, despite their functional importance, data on cryptic species are scarce. This study investigates inter-habitat variation in Caribbean cryptobenthic fishes by re-analysing a comprehensive data set from 58 rotenone stations around Buck Island, U.S. Virgin Islands. Boosted regression trees were used to associate the density and diversity of non-piscivorous cryptobenthic fishes, both in the entire data set and on reef habitats alone, with 14 abiotic and biotic variables. The study also models the habitat requirements of the three commonest species. Dead coral cover was the first or second most important variable in six of the eight models constructed. For example, within the entire data set, the number of species and total fish density increased approximately linearly with increasing dead coral cover. Dead coral was also important in multivariate analyses that discriminated 10 assemblages within the entire data set. On reef habitats, the number of species and total fish density increased dramatically when dead coral exceeded ~55 %. Live coral cover was typically less important for explaining variance in fish assemblages than dead coral, but live corals were important for maintaining high fish diversity. Coral species favoured by cryptobenthic species may be particularly susceptible to mortality, but dead coral may also provide abundant food and shelter for many fishes. Piscivore density was a key variable in the final models, but typically increased with increasing cryptobenthic fish diversity and abundance, suggesting both groups of fishes are responding to the same habitat variables. The density of territorial damselfishes reduced the number of cryptobenthic fish species on reef habitats. Finally, habitats delineated by standard remote sensing techniques supported distinct cryptobenthic fish assemblages, suggesting that such maps can be used as surrogates of general patterns of cryptic fish biodiversity in conservation planning.

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References

  • Ackerman JL, Bellwood DR (2000) Reef fish assemblages: a re-evaluation using enclosed rotenone stations. Mar Ecol Prog Ser 206:227–237

    Article  Google Scholar 

  • Alvarez-Filip L, Dulvy NK, Gill JA, Côté IM, Watkinson AR (2009) Flattening of Caribbean coral reefs: region-wide declines in architectural complexity. Proc R Soc B-Biol Sci 276:3019–3025

    Article  Google Scholar 

  • Aronson RB, Precht WF (2001) White-band disease and the changing face of Caribbean coral reefs. Hydrobiologia 460:25–38

    Article  Google Scholar 

  • Barlow GW (1981) Patterns of parental investment, dispersal and size among coral-reef fishes. Environ Biol Fishes 6:65–85

    Article  Google Scholar 

  • Bohnsack JA, Harper DE (1988) Length-weight relationships of selected marine reef fishes from the southeastern United States and the Caribbean. NOAA Technical Memorandum NMFS-SEFC-215

  • Brock RE (1982) A critique of the visual census method for assessing coral reef fish populations. Bull Mar Sci 32:269–276

    Google Scholar 

  • Clarke KR (1993) Non-parametric multivariate analyses of changes in community structure. Aust J Ecol 18:117–143

    Article  Google Scholar 

  • Clarke KR, Somerfield PJ, Gorley RN (2008) Testing of null hypotheses in exploratory community analyses: similarity profiles and biota-environment linkage. J Exp Mar Biol Ecol 366:56–69

    Article  Google Scholar 

  • De’ath G (2007) Boosted trees for ecological modeling and prediction. Ecology 88:243–251

    Article  PubMed  Google Scholar 

  • Depczynski M, Bellwood DR (2003) The role of cryptobenthic reef fishes in coral reef trophodynamics. Mar Ecol Prog Ser 256:183–191

    Article  Google Scholar 

  • Depczynski M, Bellwood DR (2004) Microhabitat utilisation patterns in cryptobenthic coral reef fish communities. Mar Biol 145:455–463

    Article  Google Scholar 

  • Depczynski M, Bellwood DR (2005a) Shortest recorded vertebrate lifespan found in a coral reef fish. Curr Biol 15:R288–R289

    Article  PubMed  CAS  Google Scholar 

  • Depczynski M, Bellwood DR (2005b) Wave energy and spatial variability in community structure of small cryptic coral reef fishes. Mar Ecol Prog Ser 303:283–293

    Article  Google Scholar 

  • Ekebom J, Laihonen P, Suominen T (2003) A GIS-based step-wise procedure for assessing physical exposure in fragmented archipelagos. Estuar Coast Shelf Sci 57:887–898

    Article  Google Scholar 

  • Elith J, Leathwick JR, Hastie T (2008) A working guide to boosted regression trees. J Anim Ecol 77:802–813

    Article  PubMed  CAS  Google Scholar 

  • Feary DA, Almany GR, McCormick MI, Jones GP (2007) Habitat choice, recruitment and the response of coral reef fishes to coral degradation. Oecologia 153:727–737

    Article  PubMed  Google Scholar 

  • Forrester GE, Steele MA (2004) Predators, prey refuges, and the spatial scaling of density-dependent prey mortality. Ecology 85:1332–1342

    Article  Google Scholar 

  • Foster SA (1985) Group foraging by a coral reef fish: a mechanism for gaining access to defended resources. Anim Behav 33:782–792

    Article  Google Scholar 

  • Froese R, Pauly D (2010) FishBase. World Wide Web electronic publication: www.fishbase.org

  • Gardner TA, Côté IM, Gill JA, Grant A, Watkinson AR (2003) Long-term region-wide declines in Caribbean corals. Science 301:958–960

    Article  PubMed  CAS  Google Scholar 

  • Greenfield DW, Johnson RK (1990a) Heterogeneity in habitat choice in cardinalfish community structure. Copeia 1990:1107–1114

    Article  Google Scholar 

  • Greenfield DW, Johnson RK (1990b) Community structure of western Caribbean blennioid fishes. Copeia 1990:433–448

    Article  Google Scholar 

  • Greenfield DW, Johnson RK (1999) Assemblage structure and habitat associations of western Caribbean gobies (Teleostei: Gobiidae). Copeia 1999:251–266

    Article  Google Scholar 

  • Harborne AR, Mumby PJ, Żychaluk K, Hedley JD, Blackwell PG (2006a) Modeling the beta diversity of coral reefs. Ecology 87:2871–2881

    Article  PubMed  Google Scholar 

  • Harborne AR, Mumby PJ, Micheli F, Perry CT, Dahlgren CP, Holmes KE, Brumbaugh DR (2006b) The functional value of Caribbean coral reef, seagrass and mangrove habitats to ecosystem processes. Adv Mar Biol 50:57–189

    Article  PubMed  Google Scholar 

  • Holmlund CM, Hammer M (1999) Ecosystem services generated by fish populations. Ecol Econ 29:253–268

    Article  Google Scholar 

  • Hughes TP (1994) Catastrophes, phase shifts, and large-scale degradation of a Caribbean coral reef. Science 265:1547–1551

    Article  PubMed  CAS  Google Scholar 

  • Jones GP, McCormick MI, Srinivasan M, Eagle JV (2004) Coral decline threatens fish biodiversity in marine reserves. Proc Natl Acad Sci USA 101:8251–8253

    Article  PubMed  CAS  Google Scholar 

  • Kendall MS, Monaco ME, Buja KR, Christensen JD, Kruer CR, Finkbeiner M, Warner RA (2001) (On-line). Methods Used to Map the Benthic Habitats of Puerto Rico and the U.S. Virgin Islands URL: http://ccma.nos.noaa.gov/products/biogeography/benthic/. Also available on U.S. National Oceanic and Atmospheric Administration. National Ocean Service, National Centers for Coastal Ocean Science Biogeography Program. 2001. (CD-ROM). Benthic Habitats of Puerto Rico and the U.S. Virgin Islands. Silver Spring, MD: National Oceanic and Atmospheric Administration

  • La Mesa G, Di Muccio S, Vacchi M (2006) Structure of a Mediterranean cryptobenthic fish community and its relationships with habitat characteristics. Mar Biol 149:149–167

    Article  Google Scholar 

  • Lieske E, Myers R (1994) Coral reef fishes: Indo-Pacific and Caribbean. Harper Collins, New York

    Google Scholar 

  • Luckhurst BE, Luckhurst K (1978) Analysis of the influence of substrate variables on coral reef fish communities. Mar Biol 49:317–323

    Article  Google Scholar 

  • Macpherson E (1994) Substrate utilisation in a Mediterranean littoral fish community. Mar Ecol Prog Ser 114:211–218

    Article  Google Scholar 

  • McField MD (1999) Coral response during and after mass bleaching in Belize. Bull Mar Sci 64:155–172

    Google Scholar 

  • McGehee MA (1994) Correspondence between assemblages of coral reef fishes and gradients of water motion, depth, and substrate size off Puerto Rico. Mar Ecol Prog Ser 105:243–255

    Article  Google Scholar 

  • McNeill SE (1994) The selection and design of marine protected areas: Australia as a case study. Biodivers Conserv 3:586–605

    Article  Google Scholar 

  • Mumby PJ, Dahlgren CP, Harborne AR, Kappel CV, Micheli F, Brumbaugh DR, Holmes KE, Mendes JM, Broad K, Sanchirico JN, Buch K, Box S, Stoffle RW, Gill AB (2006) Fishing, trophic cascades, and the process of grazing on coral reefs. Science 311:98–101

    Article  PubMed  CAS  Google Scholar 

  • Mumby PJ, Broad K, Brumbaugh DR, Dahlgren CP, Harborne AR, Hastings A, Holmes KE, Kappel CV, Micheli F, Sanchirico JN (2008) Coral reef habitats as surrogates of species, ecological functions, and ecosystem services. Conserv Biol 22:941–951

    Article  PubMed  Google Scholar 

  • Munday PL, Jones GP (1998) The ecological implications of small body size among coral-reef fishes. Oceanogr Mar Biol Annu Rev 36:373–411

    Google Scholar 

  • Munday PL, Jones GP, Caley MJ (1997) Habitat specialisation and the distribution and abundance of coral-dwelling gobies. Mar Ecol Prog Ser 152:227–239

    Article  Google Scholar 

  • Munday PL, Pierce SJ, Jones GP, Larson HK (2002) Habitat use, social organization and reproductive biology of the seawhip goby, Bryaninops yongei. Mar Freshw Res 53:769–775

    Article  Google Scholar 

  • Perry CT, Salter MA, Harborne AR, Crowley SF, Jelks HL, Wilson RW (2011) Fish as major carbonate mud producers and missing components of the tropical carbonate factory. Proc Natl Acad Sci USA 108:3865–3869

    Article  PubMed  CAS  Google Scholar 

  • Pittman SJ, Brown KA (2011) Multi-scale approach for predicting fish species distributions across coral reef seascapes. PLoS One 6:e20583.

    Article  PubMed  CAS  Google Scholar 

  • Pittman SJ, Costa BM, Battista TA (2009) Using Lidar bathymetry and boosted regression trees to predict the diversity and abundance of fish and corals. J Coast Res 25:27–38

    Article  Google Scholar 

  • Popple ID, Hunte W (2005) Movement patterns of Cephalopholis cruentata in a marine reserve in St Lucia. W.I., obtained from ultrasonic telemetry. J Fish Biol 67:981–992

    Google Scholar 

  • Pratchett MS, Munday PL, Wilson SK, Graham NAJ, Cinner JE, Bellwood DR, Jones GP, Polunin NVC, McClanahan TR (2008) Effects of climate-induced coral bleaching on coral-reef fishes - Ecological and economic consequences. Oceanogr Mar Biol Annu Rev 46:251–296

    Article  Google Scholar 

  • Randall JE (1967) Food habitats of reef fishes of the West Indies. Stud Trop Oceanogr 5:665–847

    Google Scholar 

  • R Development Core Team (2008) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna

    Google Scholar 

  • Ridgeway G (2006) Generalized boosted regression models. Documentation on the R Package ‘gbm’, version 1·5-7. http://www.i-pensieri.com/gregr/gbm.shtml

  • Rilov G, Figueira WF, Lyman SJ, Crowder LB (2006) Complex habitats may not always benefit prey: linking visual field with reef fish behavior and distribution. Mar Ecol Prog Ser 329:225–238

    Article  Google Scholar 

  • Roberts CM, Andelman S, Branch G, Bustamante RH, Castilla JC, Dugan J, Halpern BS, Lafferty KD, Leslie H, Lubchenco J, McArdle D, Possingham HP, Ruckelshaus M, Warner RR (2003) Ecological criteria for evaluating candidate sites for marine reserves. Ecol Appl 13:S199–S214

    Article  Google Scholar 

  • Robertson DR (1996) Interspecific competition controls abundance and habitat use of territorial Caribbean damselfishes. Ecology 77:885–899

    Article  Google Scholar 

  • Rodríguez-Quintal J (2010) Cryptobenthic coral reef fishes in Los Roques National Park, Caribbean of Venezuela. Rev Biol Trop 58:311–324

    PubMed  Google Scholar 

  • Rogers CS, Beets J (2001) Degradation of marine ecosystems and decline of fishery resources in marine protected areas in the US Virgin Islands. Environ Conserv 28:312–322

    Article  Google Scholar 

  • Santin S, Willis TJ (2007) Direct versus indirect effects of wave exposure as a structuring force on temperate cryptobenthic fish assemblages. Mar Biol 151:1683–1694

    Article  Google Scholar 

  • Smith-Vaniz WF, Jelks HL, Rocha LA (2006) Relevance of cryptic fishes in biodiversity assessments: A case study at Buck Island Reef National Monument, St. Croix. Bull Mar Sci 79:17–48

    Google Scholar 

  • Stallings CD (2008) Indirect effects of an exploited predator on recruitment of coral-reef fishes. Ecology 89:2090–2095

    Article  PubMed  Google Scholar 

  • Steele MA, Forrester GE (2002) Early postsettlement predation on three reef fishes: effects on spatial patterns of recruitment. Ecology 83:1076–1091

    Article  Google Scholar 

  • Stoner AW (1985) Penicillus capitatus: an algal island for macrocrustaceans. Mar Ecol Prog Ser 26:279–287

    Article  Google Scholar 

  • Sweatman HPA (1985) The influence of adults of some coral reef fishes on larval recruitment. Ecol Monogr 55:469–485

    Article  Google Scholar 

  • Syms C (1995) Multi-scale analysis of habitat association in a guild of blennioid fishes. Mar Ecol Prog Ser 125:31–43

    Article  Google Scholar 

  • Thresher RE (1976) Field analysis of territoriality of threespot damselfish, Eupomacentrus planifrons (Pomacentridae). Copeia 2:266–276

    Article  Google Scholar 

  • Townsend KA, Tibbetts IR (2000) Biomass and distribution of herbivorous blennies in the southern Great Barrier Reef. J Fish Biol 56:774–791

    Article  Google Scholar 

  • Tribollet A, Golubic S (2011) Reef bioerosion: agents and processes. In: Dubinsky Z, Stambler N (eds) Coral reefs: an ecosystem in transition. Springer, Dordrecht, Netherlands, pp 435–449

    Chapter  Google Scholar 

  • Willis TJ (2001) Visual census methods underestimate density and diversity of cryptic reef fishes. J Fish Biol 59:1408–1411

    Article  Google Scholar 

  • Willis TJ, Anderson MJ (2003) Structure of cryptic reef fish assemblages: relationships with habitat characteristics and predator density. Mar Ecol Prog Ser 257:209–221

    Article  Google Scholar 

  • Wilson S (2001) Multiscale habitat associations of detrivorous blennies (Blenniidae: Salariini). Coral Reefs 20:245–251

    Article  Google Scholar 

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Acknowledgments

ARH is grateful to the Marine Spatial Ecology Laboratory for discussions which improved the paper, especially Y.-M. Bozec and P. Sutcliffe. We thank N. Wolff for preparation of Fig. 1 and Figure E4.1 in the ESM. ARH was supported by Fellowship NE/F015704/1 from the Natural Environment Research Council. We are grateful to NOAA/NOS, C. Caldow, J. Christensen, M. Monaco and Z. Hillis-Starr for generous assistance with the original study and permitting process (permit # BUIS-2001-SCI-0003). Any use of trade, product, or firm names is for descriptive purposes only and does not imply endorsement by the U.S. Government.

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Correspondence to A. R. Harborne.

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Harborne, A.R., Jelks, H.L., Smith-Vaniz, W.F. et al. Abiotic and biotic controls of cryptobenthic fish assemblages across a Caribbean seascape. Coral Reefs 31, 977–990 (2012). https://doi.org/10.1007/s00338-012-0938-4

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