Skip to main content

Advertisement

Log in

Proteolysis of a nucleotide excision repair protein by the 26S proteasome

  • Research Article
  • Published:
Current Genetics Aims and scope Submit manuscript

Abstract

The 26S proteasome degrades a broad spectrum of proteins and interacts with several nucleotide excision repair (NER) proteins, including the complex of Rad4 and Rad23 that binds preferentially to UV-damaged DNA. The rate of NER is increased in yeast strains with mutations in genes encoding subunits of the 26S proteasome, indicating that it could negatively regulate a repair process. The specific function of the 26S proteasome in DNA repair is unclear. It might degrade DNA repair proteins after repair is completed or act as a molecular chaperone to promote the assembly or disassembly of the repair complex. In this study, we show that Rad4 is ubiquitylated and that Rad23 can control this process. We also find that ubiquitylated Rad4 is degraded by the 26S proteasome. However, the interaction of Rad23 with Rad4 is not only to control degradation of Rad4, but also to assist in assembling the NER incision complex at UV-induced cyclobutane pyrimidine dimers. We speculate that, following the completion of DNA repair, specific repair proteins might be degraded by the proteasome to regulate repair.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Aboussekhra A, Biggerstaff M, Shivji MK, Vilpo JA, Moncollin V, Podust VN, Protic M, Hubscher U, Egly JM, Wood RD (1995) Mammalian DNA nucleotide excision repair reconstituted with purified protein components. Cell 80:859–868

    Article  PubMed  CAS  Google Scholar 

  • Adams A, Gottschling DE, Kaiser CA, Stearns T (1998) Methods in yeast genetics: a laboratory course manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.

    Google Scholar 

  • Bohr VA, Smith CA, Okumoto DS, Hanawalt PC (1985) DNA repair in an active gene: removal of pyrimidine dimers from the DHFR gene of CHO cells is much more efficient than in the genome overall. Cell 40:359–369

    Article  PubMed  CAS  Google Scholar 

  • Braun BC, Glickman M, Kraft R, Dahlmann B, Kloetzel PM, Finley D, Schmidt M (1999) The base of the proteasome regulatory particle exhibits chaperone-like activity. Nat Cell Biol 1:221–226

    Article  PubMed  CAS  Google Scholar 

  • Bucheli M, Lommel L, Sweder K (2001) The defect in transcription-coupled repair displayed by a S. cerevisiae rad26 mutant is dependent on carbon source and is not associated with a lack of transcription. Genetics 158:989–997

    PubMed  CAS  Google Scholar 

  • Chen L, Madura K (2002) Rad23 promotes the targeting of proteolytic substrates to the proteasome. Mol Cell Biol 22: 4902–4913

    Article  PubMed  CAS  Google Scholar 

  • Cleaver JE, Kraemer KH (1989) Xeroderma pigmentosum. McGraw-Hill

  • Eisen JA, Sweder KS, Hanawalt PC (1995) Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions. Nucleic Acids Res 23:2715–2723

    Article  PubMed  CAS  Google Scholar 

  • Gillette TG, Huang W, Russell SJ, Reed SH, Johnston SA, Friedberg EC (2001) The 19S complex of the proteasome regulates nucleotide excision repair in yeast. Genes Dev 15: 1528–1539

    Article  PubMed  CAS  Google Scholar 

  • Guzder SN, Bailly V, Sung P, Prakash L, Prakash S (1995) Yeast DNA repair protein RAD23 promotes complex formation between transcription factor TFIIH and DNA damage recognition factor RAD14. J Biol Chem 270:8385–8388

    Article  PubMed  CAS  Google Scholar 

  • Guzder SN, Sung P, Prakash L, Prakash S (1998a) Affinity of yeast nucleotide excision repair factor 2, consisting of the Rad4 and Rad23 proteins, for ultraviolet damaged DNA. J Biol Chem 273:31541–31546

    Article  PubMed  CAS  Google Scholar 

  • Guzder SN, Sung P, Prakash L, Prakash S (1998b) The DNA-dependent ATPase activity of yeast nucleotide excision repair factor 4 and its role in DNA damage recognition. J Biol Chem 273:6292–6296

    Article  PubMed  CAS  Google Scholar 

  • Jansen LE, Verhage RA, Jol B (1998) Preferential binding of yeast Rad4.Rad23 complex to damaged DNA. J Biol Chem 273:33111–33114

    Article  PubMed  CAS  Google Scholar 

  • Jelinsky SA, Samson LD (1999) Global response of Saccharomyces cerevisiae to an alkylating agent. Proc Natl Acad Sci USA 96:1486–1491

    Article  PubMed  CAS  Google Scholar 

  • Jelinsky SA, Estep P, Church GM, Samson LD (2000) Regulatory networks revealed by transcriptional profiling of damaged Saccharomyces cerevisiae cells: Rpn4 links base excision repair with proteasomes. Mol Cell Biol 20:8157–8167

    Article  PubMed  CAS  Google Scholar 

  • Lommel L, Chen L, Madura K, Sweder K (2000) The 26S proteasome negatively regulates the level of overall genomic nucleotide excision repair. Nucleic Acids Res 28:4839–4845

    Article  PubMed  CAS  Google Scholar 

  • Mellon I, Spivak G, Hanawalt PC (1987) Selective removal of transcription-blocking DNA damage from the transcribed strand of the mammalian DHFR gene. Cell 51:241–249

    Article  PubMed  CAS  Google Scholar 

  • Mu D, Park CH, Matsunaga T, Hsu DS, Reardon JT, Sancar A (1995) Reconstitution of human DNA repair excision nuclease in a highly defined system. J Biol Chem 270:2415–2418

    Article  PubMed  CAS  Google Scholar 

  • Mueller JP, Smerdon MJ (1996) Rad23 is required for transcription-coupled repair and efficient overall repair in Saccharomyces cerevisiae. Mol Cell Biol 16:2361–2368

    PubMed  CAS  Google Scholar 

  • Nasmyth KA, Reed SI (1980) Isolation of genes by complementation in yeast: molecular cloning of a cell-cycle gene. Proc Natl Acad Sci USA 77:2119–2123

    Article  PubMed  CAS  Google Scholar 

  • Ortolan TG, Tongaonkar P, Lambertson D, Chen L, Schauber C, Madura K (2000) The DNA repair protein Rad23 is a negative regulator of multi-ubiquitin chain assembly. Nat Cell Biol 2:601–608

    Article  PubMed  CAS  Google Scholar 

  • Reardon JT, Mu D, Sancar A (1996) Overproduction, purification, and characterization of the XPC subunit of the human DNA repair excision nuclease. J Biol Chem 271:19451–19456

    Article  PubMed  CAS  Google Scholar 

  • Russell SJ, Reed SH, Huang W, Friedberg EC, Johnston SA (1999) The 19S regulatory complex of the proteasome functions independently of proteolysis in nucleotide excision repair. Mol Cell 3:687–695

    Article  PubMed  CAS  Google Scholar 

  • Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.

    Google Scholar 

  • Schauber C, Chen L, Tongaonkar P, Vega I, Lambertson D, Potts W, Madura K (1998) Rad23 links DNA repair to the ubiquitin/proteasome pathway. Nature 391:715–718

    Article  PubMed  CAS  Google Scholar 

  • Selby CP, Sancar A (1990) Structure and function of the (A)BC excinuclease of Escherichia coli. Mutat Res 236:203–211

    PubMed  CAS  Google Scholar 

  • Silver PA, Chiang A, Sadler I (1988) Mutations that alter both localization and production of a yeast nuclear protein. Genes Dev 2:707–717

    Article  PubMed  CAS  Google Scholar 

  • Sweder KS, Hanawalt PC (1992) Preferential repair of cyclobutane pyrimidine dimers in the transcribed strand of a gene in yeast chromosomes and plasmids is dependent on transcription. Proc Natl Acad Sci USA 89:10696–10700

    Article  PubMed  CAS  Google Scholar 

  • Sweder KS, Hanawalt PC (1994) The COOH terminus of suppressor of stem loop (SSL2/Rad25) in yeast is essential for overall genomic excision repair and transcription-coupled repair. J Biol Chem 269:1852–1857

    PubMed  CAS  Google Scholar 

  • Van Gool AJ, Verhage R, Swagemakers SM, Van de Putte P, Brouwer J, Troelstra C, Bootsma D, Hoeijmakers JH (1994) RAD26, the functional S. cerevisiae homolog of the Cockayne syndrome B gene ERCC6. EMBO J 13:5361–5369

    PubMed  Google Scholar 

  • Varshavsky A (1997) The ubiquitin system. Trends Biochem Sci 22:383–387

    Article  PubMed  CAS  Google Scholar 

  • Verhage RA, Zeeman AM, Lombaerts M, Van de Putte P Brouwer J (1996) Analysis of gene- and strand-specific repair in the moderately UV-sensitive Saccharomyces cerevisiae rad23 mutant. Mutat Res 362:155–165

    PubMed  Google Scholar 

  • Vu PK, Sakamoto KM (2000) Ubiquitin-mediated Proteolysis and Human Disease. Mol Genet Metab 71:261–266

    Article  PubMed  CAS  Google Scholar 

  • Wang Z, Wei S, Reed SH, Wu X, Svejstrup JQ, Feaver WJ, Romberg RD, Friedberg EC (1997) The RAD7, RAD16, and RAD23 genes of Saccharomyces cerevisiae: requirement for transcription-independent nucleotide excision repair in vitro and interactions between the gene products. Mol Cell Biol 17:635–643

    PubMed  CAS  Google Scholar 

  • Watkins JF, Sung P, Prakash L, Prakash S (1993) The Saccharomyces cerevisiae DNA repair gene RAD23 encodes a nuclear protein containing a ubiquitin-like domain required for biological function. Mol Cell Biol 13:7757–7765

    PubMed  CAS  Google Scholar 

  • Weeda G, Rossignol M, Fraser RA, Winkler GS, Vermeulen W, Veer LJ van’t, Ma L, Hoeijmakers JHJ, Egly J-M (1997) The XPB subunit of repair/transcription factor TFIIH directly interacts with SUG1, a subunit of the 26S proteasome and putative transcription factor. Nucleic Acids Res 25:2274–2283

    Article  PubMed  CAS  Google Scholar 

  • Yanagi S, Shimbara N, Tamura T (2000) Tissue and cell distribution of a mammalian proteasomal ATPase, MSS1, and its complex formation with the basal transcription factors. Biochem Biophys Res Commun 279:568–573

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Kevin S. Sweder.

Additional information

Communicated by S. Hohmann

Published online: 11 October 2002

Rights and permissions

Reprints and permissions

About this article

Cite this article

Lommel, L., Ortolan, T., Chen, L. et al. Proteolysis of a nucleotide excision repair protein by the 26S proteasome. Curr Genet 42, 9–20 (2002). https://doi.org/10.1007/s00294-002-0332-9

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00294-002-0332-9

Keywords

Navigation