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Genetic differences between wild and hatchery populations ofDiplodus sargus andD. vulgaris inferred from RAPD markers: implications for production and restocking programs design

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Abstract

Restocking and stock enhancement programs are now recognized as an important tool for the management of fishery resources. It is important, however, to have an adequate knowledge on the genetic population structure of both the released stock and the wild population before carrying out such programs. In this study, random amplified polymorphic DNA (RAPD) markers were applied to assess genetic diversity and population structure of wild and hatchery populations of the white seabreamDiplodus sargus and the common two-banded seabreamD. vulgaris (Sparidae). The estimated values for intrapopulation genetic variation, measured using the percentage of polymorphic loci (%P), Shannon indexH’, and Nei’s gene diversity (h), showed high values for all populations. The percentage of genetic variation withinD. sargus andD. vulgaris populations, based on coefficient of gene differentiation, reached 82.5% and 90% of the total genetic variation, respectively. An undeniable decrease in genetic variation was found in both hatchery populations, particularly inD. sargus, compared to the wild ones. However, the high values of variation within all populations and the low levels of genetic variation among populations did not indicate inbreeding or depression effects, thus indicating a fairly proper hatchery management. Nevertheless, the results of this study highlight the importance of monitoring the genetic variation of hatchery populations, particularly those to be used in restocking programs. The creation of a genetic baseline database will contribute to a more efficient conservation management and to the design of genetically sustainable restocking programs.

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References

  • Alarcón JA, Magoulas A, Georgakopoulos T, Zouros E, Alvarez MC, 2004. Genetic comparison of wild and cultivated European populations of the gilthead seabream (Spaurus aurata). Aquaculture 230: 65–80.

    Article  Google Scholar 

  • Ali BA, Ahmed MMM, El-Zaeem S, 2004. Technical note: application of RAPD markers in fish. Part II: among and within families; Cichlidae (freshwater), Mugilidae (catadromous), Sparidae and Serranidae (marine). Int J Biotechnol 6: 393–401.

    Article  Google Scholar 

  • Allendorf FW, Phelps SR, 1980. Loss of genetic variation in a hatchery stock of cutthroat trout. American Fisheries Society 109: 537–543.

    Article  Google Scholar 

  • Bell JD, Bartley DM, Lorenzen K, Loneragan NR, 2006. Restocking and stock enhancement of coastal fisheries: potential, problems and progress. Fish. Res. 80: 1–8.

    Article  Google Scholar 

  • Bilgen G, Akhan S, Arabaci M, Oguz I, 2007. Geneticdiversity of gilthead sea bream (Sparus aurata) broodstocks as determined by RAPD-PCR. Israeli Journal of Aquaculture-Bamidgeh 59: 217–223.

    Google Scholar 

  • Cross TF, 2000. Genetic implications of translocation and stocking of fish species, with particular reference to Western Australia. Aquacult. Res. 31: 83–94.

    Article  Google Scholar 

  • D’Anna G, Badalamenti F, 2000. Iniziativa di restocking del sarago maggiore,Diplodus sargus, e tecniche di monitoraggio in un’area protetta con strutture artificiali nel Golfo di Castellammare (Sicilia N-O). Project no. 4C124 of “Ministero delle politiche Agricole e Forestali (Italy)”: 52.

  • Domingues VS, Santos RS, Brito A, Alexandrou M, Almada VC, 2007. Mitochondrial and nuclear markers reveal isolation by distance and effects of Pleistocene glaciations in the northeastern Atlantic and Mediterranean populations of the white seabream (Diplodus sargus, L.). J Exp Mar Biol Ecol 346: 102–113.

    Article  CAS  Google Scholar 

  • Erzini K, Bentes L, Coelho R, Correia C, Lino PG, Monteiro P, et al. 2001. Fisheries biology and assessment of demersal species (Sparidae) from the South of Portugal. Final report. UE-DG XIV - 98/082.

  • Excoffier L, Estoup A, Cornuet JM, 2005. Bayesian analysis of an admixture model with mutations and arbitrarily linked markers. Genetics 169: 1727–1738.

    Article  CAS  PubMed  Google Scholar 

  • Gonęalves JMS, Bentes L, Coelho R, Correia C, Lino PG, Monteiro P, et al. 2003. Age and growth, maturity, mortality and yield-per-recruit for two-banded bream (Diplodus vulgaris Geoffr.) from the south coast of Portugal. Fish Res 62: 349–359.

    Article  Google Scholar 

  • González-Wangüemert M, Pérez-Ruzafa Á, Marcos C, García-Charton J, 2004. Genetic differentiation ofDiplodus sargus (Pisces: Sparidae) populations in Southwest Mediterranean. Biol J Linn Soc 82: 249–261.

    Article  Google Scholar 

  • Guidetti P, Sala E, 2007. Community-wide effects of marine reserves in the Mediterranean Sea. Mar Ecol-Prog Ser 335: 43–56.

    Article  Google Scholar 

  • Guttman SI, Berg D, 1998. Changes in the genetic diversity of aquatic organisms in the great lakes: causes and consequences. Setac News 23-24.

  • Harris SA, 1999. RAPDs in systematics—a useful methodology?. In: Hollingsworth PM, Batesman RM, Gornall RJ, eds. Molecular Systematics and Plant Evolution. London: Taylor and Francis: 211–228.

    Google Scholar 

  • Jiang S, Yang H, Su T, Gong S, 2004. Genetic diversity of three geographical populations ofPagrosomus major revealed by RAPD analysis. J Fish China 28: 334–338.

    CAS  Google Scholar 

  • Jones CJ, Edwards KJ, Castaglione S, Winfield MO, Sala F, van de Wiel C, et al. 1997. Reproducibility testing of RAPD, AFLP and SSR markers in plants by a network of European laboratories. Mol Breed 3: 381–390.

    Article  CAS  Google Scholar 

  • Khol TL, Khoo G, Fan LQ, Phang VPE, 1999. Genetic diversity among wild forms and cultivated varieties of discus (Symphysodon spp.) asrevealed by random amplified polymorphic DNA (RAPD) fingerprinting. Aquaculture 173: 485–497.

    Article  Google Scholar 

  • Lenfant P, Planes S, 1996. Genetic differentiation of white sea bream within the Lion’s Gulf and the Ligurian Sea (Mediterranean Sea). J Fish Biol 49: 613–621.

    Article  Google Scholar 

  • Liu Y, Wang X, Liu L, 2004. Analysis of genetic variation in surviving apple shoots following cryopreservation by vitrification. Plant Sci 166: 677–685.

    Article  CAS  Google Scholar 

  • Liu YG, Chen SL, Li BF, 2007. Genetic differentiation among common and selected hatchery populations of flounder: Evidence from RAPD markers. Biochem Syst Ecol 35: 689–695.

    Article  CAS  Google Scholar 

  • Liu Z, Li P, Argue BJ, Dunham RA, 1998. Inheritance of RAPD markers in channel catfish (Ictalurus punctatus), blue fish (I. furcatus) and their F1, F2 and backcross hybrids. Anim Genet 29: 58.

    Article  CAS  Google Scholar 

  • Liu ZJ, Cordes JF, 2004. DNA marker technologies and their applications in aquaculture genetics. Aquaculture 238: 1–37.

    Article  CAS  Google Scholar 

  • Lynch M, Milligan BG, 1994. Analysis of population genetic structure with RAPD markers. Mol Ecol 3: 91–99.

    Article  CAS  PubMed  Google Scholar 

  • Man A, Law R, Polunin NVC, 1995. Role of marine reserves in recruitment to reef fisheries: a metapopulation model. Biol Conserv 71: 197–204.

    Article  Google Scholar 

  • Meffe GK, 1986. Conservation genetics and the management of endangered species. Fisheries 11: 14–23.

    Article  Google Scholar 

  • Miller MP, 1997. A Windows program for the analysis of allozyme and molecular population genetic data (TFPGA). Department of Biological Sciences, Northern Arizona University, Flagstaff, USA.

    Google Scholar 

  • Nei M, 1972. Genetic distance between populations. Am Nat 106: 283–292.

    Article  Google Scholar 

  • Nei M, 1973. Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci U. S. A. 70: 3321–3323.

    Article  CAS  PubMed  Google Scholar 

  • Nei M, 1987. Molecular evolutionary genetics. New York: Columbia University Press.

    Google Scholar 

  • Peakall R, Smouse PE, 2006. GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes 6: 288–295.

    Article  Google Scholar 

  • Schaal BA, Leverich WJ, 2001. Plant population biology and systematics. Taxon 50: 357–373.

    Article  Google Scholar 

  • Střttrup JG, Sparrevohn CR, 2007. Can stock enhancement enhance stocks? J Sea Res 57: 104–113.

    Article  Google Scholar 

  • Taniguchi N, 2004. Genetic factors in broodstock management for seed production. Rev Fish Biol Fisher 13: 177–185.

    Article  Google Scholar 

  • Tringali MD, Bert TM, 1998. Risk to genetic effective population sizes hould be animport ant consideration in fish stock enhancement programs. B Mar Sci 62: 641–659.

    Google Scholar 

  • Wang C, Li S, 2004. Phylogenetic relationships of ornamental (koi) carp, Oujiang color carp and long-fin carp revealed by mitochondrial DNA COII gene sequences and RAPD analysis. Aquaculture 231: 83–91.

    Article  CAS  Google Scholar 

  • Ward RD, 2006. The importance of identifying spatial population structure in restocking and stock enhancement programs. Fish Res 80: 9–18.

    Article  Google Scholar 

  • Weising K, Nybom H, Wolff K, Meyer W, 1995. DNA fingerprinting in plants and fungi. CRC Press, London.

    Google Scholar 

  • Whitehead PJP, 1986. In: Bauchot M-L, Hureau J-C, Nielsen J, Tortonese E, eds. Fishes of the North-eastern Atlantic and the Mediterranean. Paris: UNESCO.

    Google Scholar 

  • Williams JGK, Kubelik AR, Livak KJ, Rafalski JA, Tingey SV, 1990. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res 8: 6531–6535.

    Article  Google Scholar 

  • Yeh FC, Yang RC, Boyle TBJ, Ye ZH, Mao JX, 1997. POPGENE, the user-friendly shareware for population genetic analysis. Molecular Biology and Biotechnology Centre, University of Alberta, Edmonton, Canada.

    Google Scholar 

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Correspondence to A. Leitão.

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Pereira, J.C., Lino, P.G., Leitão, A. et al. Genetic differences between wild and hatchery populations ofDiplodus sargus andD. vulgaris inferred from RAPD markers: implications for production and restocking programs design. J Appl Genet 51, 67–72 (2010). https://doi.org/10.1007/BF03195712

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  • DOI: https://doi.org/10.1007/BF03195712

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