Skip to main content
Log in

DNA sequence organization in the genomes of five marine invertebrates

  • Published:
Chromosoma Aims and scope Submit manuscript

Abstract

The arrangement of repetitive and non-repetitive sequence was studied in the genomic DNA of the oyster (Crassostrea virginica), the surf clam (Spisula solidissima), the horseshoe crab (Limulus polyphemus), a nemertean worm (Cerebratulus lacteus) and a jellyfish (Aurelia aurita). Except for the jellyfish these animals belong to the protostomial branch of animal evolution, for which little information regarding DNA sequence organization has previously been available. The reassociation kinetics of short (250–300 nucleotide) and long (2,000–3,000 nucleotide) DNA fragments was studied by the hydroxyapatite method. It was shown that in each case a major fraction of the DNA consists of single copy sequences less than about 3,000 nucleotides in length, interspersed with short repetitive sequences. The lengths of the repetitive sequences were estimated by optical hyperchromicity and S1 nuclease measurements made on renaturation products. All the genomes studied include a prominent fraction of interspersed repetitive sequences about 300 nucleotides in length, as well as longer repetitive sequence regions.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Ando, T.: A nuclease specific for heat-denatured DNA isolated from a product of Aspergillus oryzae. Biochim. biophys. Acta (Amst.) 114, 158–168 (1966)

    Google Scholar 

  • Bell, E., Reeder, R.: The effect of fertilization on protein synthesis in the egg of the surf clam Spisula solidissima. Biochim. biophys. Acta (Amst.) 142, 500–611 (1967)

    Google Scholar 

  • Bonner, J., Garrard, W. T., Gottesfeld, J., Holmes, D. S., Sevall, J. S., Wilkes, M.: Functional organization of the mammalian genome. Cold Spr. Harb. Symp. quant. Biol. 38, 303–310 (1974)

    Google Scholar 

  • Britten, R. J., Davidson, E. H.: Repetitive and non-repetitive DNA sequences and a speculation on the origins of evolutionary novelty. Quart. Rev. Biol. 47, 111–138 (1971)

    Google Scholar 

  • Britten, R. J., Graham, D. E., Neufeld, B. R.: Analysis of repeating DNA sequences by reassociation. In: Methods in enzymology (L. Grossman and K. Moldave, eds.), vol. 29, part E, p. 363–418. New York: Academic Press 1974

    Google Scholar 

  • Britten, R. J., Kohne, D. E.: Nucleotide sequence repetition in DNA. Carnegie Inst. Yearb. 65, 78–106 (1967)

    Google Scholar 

  • Britten, R. J., Kohne, D.: Repeated nucleotide sequences. Carnegie Inst. Wash. Yearb. 66, 73–76 (1968)

    Google Scholar 

  • Brunside, B., Kozak, C., Kafatos, F. C.: Tubulin determination by an isotope dilution-vin-blastine precipitation method. The tubulin content of Spisula eggs and embryos. J. Cell Biol. 59, 755–762 (1973)

    Google Scholar 

  • Chamberlin, M. E., Britten, R. J., Davidson, E. H.: Sequence organization in Xenopus DNA studied by the electron microscope. J. molec. Biol. (in press, 1975)

  • Cisne, J. L.: Trilobites and the origin of arthropods. Science 186, 13–18 (1974)

    Google Scholar 

  • Davidson, E. H., Britten, R. J.: Organization, transcription, and regulation in the animal genome. Quart. Rev. Biol. 48, 565–613 (1973)

    Google Scholar 

  • Davidson, E. H., Galau, G. A., Angerer, R. C., Britten, R. J.: Comparative aspects of DNA sequence organization in metazoa. Chromosoma (Berl.) 51, 253–259 (1975a)

    Google Scholar 

  • Davidson, E. H., Graham, D. E., Neufeld, B. R., Chamberlin, M. E., Amenson, C. S., Hough, B. R., Britten, R. J.: Arrangement and characterization of repetitive sequence elements in animal DNAs. Cold Spr. Harb. Symp. quant. Biol. 38, 295–301 (1974)

    Google Scholar 

  • Davidson, E. H., Hough, B. R., Amenson, C. S., Britten, R. J.: General interspersion of repetitive with non-repetitive sequence elements in the DNA of Xenopus. J. molec. Biol. 77, 1–23 (1973)

    Google Scholar 

  • Davidson, E. H., Hough, B. R., Smith, M. J., Graham, D. E., Klein, W. H., Galau, G. A., Chamberlin, M. E., Britten, R. J.: The organization of eukaryotic DNA and the sequence environment of structural genes. In: The eukaryote chromosome (W. J. Peacock and R. D. Brock, eds.). Canberra: Australian University Press (in press, 1975b)

    Google Scholar 

  • Firtel, R. A., Bonner, J.: Characterization of the genome of the cellular slime mold Dictyostelium discoideum. J. molec. Biol. 66, 339–361 (1972)

    Google Scholar 

  • Firtel, R. A., Monroy, A.: Polysomes and RNA synthesis during early development of the surf clam Spisula solidissima. Develop. Biol. 21, 87–104 (1970)

    Google Scholar 

  • Graham, D. E., Neufeld, B. R., Davidson, E. H., Britten, R. J.: Interspersion of repetitive and non-repetitive DNA sequences in the sea urchin genome. Cell 1, 127–137 (1974)

    Google Scholar 

  • Hinegardner, R.: Cellular DNA content of the mollusca. Comp. Biochem. Physiol. 47A, 447–460 (1974)

    Google Scholar 

  • Hyman, L. H.: The invertebrates: Protozoa through Ctenophora, vol. 1, ch. VII. New York: McGraw-Hill Book Co. 1940

    Google Scholar 

  • Manning, J. E., Schmid, C. W., Davidson, N.: Interspersion of repetitive and non-repetitive DNA sequences in the Drosophila melanogaster genome. Cell 4, 141–155 (1975)

    Google Scholar 

  • Morrow, J. F.: Mapping the SV40 chromosome by use of restriction enzymes. Ph. D. Thesis, Stanford University 1974

  • Noll, H.: Characterization of macromolecules by constant velocity sedimentation. Nature (Lond.) 215, 360–363 (1967)

    Google Scholar 

  • Sharp, P., Sugden, B., Sambrook, J.: Detection of two restriction endonuclease activities in Haemophilus parainfluenzae using analytical agarose-ethidium bromide electrophoresis. Biochemistry 12, 3055–3063 (1973)

    Google Scholar 

  • Studier, F. W.: Sedimentation studies of the size and shape of DNA. J. molec. Biol. 11, 373–390 (1965)

    Google Scholar 

  • Wilson, E. B.: The cell in development and heredity, third ed., p. 1054–1055. New York: Macmillan Co. 1925

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Additional information

Also staff member, Carnegie Institution of Washington.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Goldberg, R.B., Crain, W.R., Ruderman, J.V. et al. DNA sequence organization in the genomes of five marine invertebrates. Chromosoma 51, 225–251 (1975). https://doi.org/10.1007/BF00284817

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00284817

Keywords

Navigation