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Microsatellite markers for the giant kelp Macrocystis pyrifera

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Abstract

We report the isolation and characterization of 16 microsatellite loci to study the population genetics of the giant kelp, Macrocystis pyrifera. Markers were obtained by screening a genomic library enriched for microsatellite motifs. Of the 37 primer pairs defined, 16 amplified clean polymorphic microsatellites and are described. These loci identified a number of alleles ranging from three to forty (mean = 16.5, and gene diversity ranging from 0.469 to 0.930 (mean = 0.774). The isolation and characterization of these highly polymorphic markers will greatly benefit much needed studies on the molecular ecology of this important macroalga.

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References

  • Alberto F (2009) MsatAllele_1.0: an R package to visualize the binning of microsatellite alleles. J Hered. doi:10.1093/jhered/esn110

  • Billote N, Lagoda PJL, Risterucci A et al (1999) Microsatellite enriched libraries: applied methodology for the development of ISSR markers in tropical crops. Fruits 54:277–288

    Google Scholar 

  • Coyer JA, Smith GJ, Andersen RA (2001) Evolution of Macrocystis spp. (Phaeophyceae) as determined by ITS1 and ITS2 sequences. J Phycol 37:574–585. doi:10.1046/j.1529-8817.2001.037001574.x

    Article  Google Scholar 

  • Graham MH (2004) Effects of local deforestation on the diversity and structure of Southern California giant kelp forest food webs. Ecosystems (NY, Print) 7:341–357. doi:10.1007/s10021-003-0245-6

    Google Scholar 

  • Graham MH, Vásquez JA, Buschmann AH (2007) Global ecology of the giant kelp Macrocystis: from ecotypes to ecossystems. Oceanogr Mar Biol Annu Rev 45:39–88

    Google Scholar 

  • Koblizkova A, Dolezel J, Macas J (1998) Subtraction with 3′ modified oligonucleotides eliminates amplification artifacts in DNA libraries enriched for microsatellites. Biotechniques 25:32

    CAS  PubMed  Google Scholar 

  • Raymond M, Rousset F (1995) Genepop (version-1.2)—population-genetics software for exact tests and ecumenicism. J Hered 86:248–249

    Google Scholar 

  • Rozen S, Skaletsky HJ (2000) Primer 3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S (eds) Bioinformatics methods and protocols: methods in molecular biology. Humana Press, Totowa, pp 365–386

    Google Scholar 

  • Van Oosterhout C, Hutchinson WF, Wills DPM et al (2004) MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4:535–538. doi:10.1111/j.1471-8286.2004.00684.x

    Article  Google Scholar 

  • Varela-Alvarez E, Andreakis N, Lago-Leston A et al (2006) Genomic DNA isolation from green and brown algae (Caulerpales and Fucales) for microsatellite library construction. J Phycol 42:741–745. doi:10.1111/j.1529-8817.2006.00218.x

    Article  CAS  Google Scholar 

Download references

Acknowledgments

We thank E. Hoaglund and T. Crombie for technical assistance. Financial support for this work was provided by the US National Science Foundation grant numbers OCE96-14091, OCE99-82105, and OCE06-20276 and by Fundação para a Ciência e Tecnologia pos-doctoral grant [SFRH/BPD/14945/2004 to F.A.], and grant MEGIKELP [PTDC/MAR/65461/2006].

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Correspondence to Filipe Alberto.

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Alberto, F., Whitmer, A., Coelho, N.C. et al. Microsatellite markers for the giant kelp Macrocystis pyrifera . Conserv Genet 10, 1915–1917 (2009). https://doi.org/10.1007/s10592-009-9853-9

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  • DOI: https://doi.org/10.1007/s10592-009-9853-9

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