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Development and characterization of 18 microsatellite loci for the spotted salamander (Ambystoma maculatum) using paired-end Illumina shotgun sequencing

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Abstract

We isolated and screened 68 microsatellite loci from the spotted salamander, Ambystoma maculatum, in Missouri, USA. Eighteen polymorphic loci were identified and pooled into two multiplex reactions. These loci are a needed addition to the known loci for A. maculatum, which were developed in a different geographic region and are unsuitable for population or landscape genetic analyses in Missouri. To effectively protect and manage this species, regionally-relevant studies of population genetic structure and connectivity are necessary.

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References

  • Castoe TA, Poole AW, de Koning APJ, Jones KL, Tomback DF, Oyler-McCance SJ, Fike JA, Lance SL, Streicher JW, Smith EN, Pollock DD (2012) Rapid microsatellite identification from Illumina paired-end genomic sequencing in two birds and a snake. PLoS ONE 7:e30953

    Article  PubMed  CAS  Google Scholar 

  • Holleley CE, Geerts PG (2009) Multiplex manager 1.0: a cross-platform computer program that plans and optimizes multiplex PCR. Biotechniques 46:511–517

    Article  PubMed  CAS  Google Scholar 

  • Julian SE, King TL, Savage WK (2003) Isolation and characterization of novel tetranucleotide microsatellite DNA markers for the spotted salamander, Ambystoma maculatum. Mol Ecol Notes 3:7–9

    Article  CAS  Google Scholar 

  • Meirmans PG, Van Tienderen PH (2004) GENOTYPE and GENODIVE: two programs for the analysis of genetic diversity of asexual organisms. Mol Ecol Notes 4:792–794

    Article  Google Scholar 

  • Nunziata SO, Lance SL, Jones KL, Nerkowski SA, Metcalf AE (2013) Development and characterization of twenty-three microsatellite markers for the freshwater minnow Santa Ana speckled dace (Rhinichthys osculus spp., Cyprinidae) using paired-end Illumina shotgun sequencing. Conserv Genet Resour 5:145–148

    Article  Google Scholar 

  • Petranka JW (1998) Salamanders of the United States and Canada. Smithsonian Institution Press, Washington, DC

  • Purrenhage JL, Niewiarowski PH, Moore FB-G (2009) Population structure of spotted salamanders (Ambystoma maculatum) in a fragmented landscape. Mol Ecol 18:235–247

    Article  PubMed  CAS  Google Scholar 

  • Richardson JL (2012) Divergent landscape effects on population connectivity in two co-occurring amphibian species. Mol Ecol 21:4437–4451

    Article  PubMed  Google Scholar 

  • Rousset F (2008) GENEPOP’007: a complete re-implementation of the GENEPOP software for Windows and Linux. Mol Ecol Resour 8:103–106

    Article  PubMed  Google Scholar 

  • Rozen S, Skaletsky HJ (2000) Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S (eds) Bioinformatics methods and protocols: methods in molecular biology. Humana Press, Totowa, pp 365–386

    Google Scholar 

  • Wieczorek AM, Zamudio KR, King TL, Gjetvaj B (2002) Isolation of microsatellite loci in spotted salamanders (Ambystoma maculatum). Mol Ecol Notes 2:313–315

    Article  CAS  Google Scholar 

  • Zamudio KR, Savage WK (2003) Historical isolation, range expansion, and secondary contact of two highly divergent mitochondrial lineages in spotted salamanders (Ambystoma maculatum). Evolution 57:1631–1652

    PubMed  Google Scholar 

  • Zamudio KR, Wieczorek AM (2007) Fine-scale spatial genetic structure and dispersal among spotted salamander (Ambystoma maculatum) breeding populations. Mol Ecol 16:257–274

    Article  PubMed  Google Scholar 

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Acknowledgments

We thank S. Lance (University of Georgia) for Illumina sequencing and processing of reads. This research was funded by the DoD Strategic Environmental Research and Development Program (RC2155).

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Correspondence to William E. Peterman.

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Peterman, W.E., Brocato, E.R., Pauley, L.R. et al. Development and characterization of 18 microsatellite loci for the spotted salamander (Ambystoma maculatum) using paired-end Illumina shotgun sequencing. Conservation Genet Resour 5, 989–991 (2013). https://doi.org/10.1007/s12686-013-9950-4

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