Differentiation and inter-genomic relationships among C, E and D genomes in the Oryzaofficinalis complex (Poaceae) as revealed by multicolor genomic in situ hybridization

Abstract 

The multicolor genomic in situ hybridization (McGISH) method was used to study differentiation and relationships among the C, D and E genomes in the officinalis complex of the genus Oryza. The chromosomes of Oryza alta (CCDD genomes) were hybridized with labelled probes of the C genome (from diploid Oryza eichingeri and Oryza officinalis) and the E genome (from Oryza australiensis) simultaneously. By adjusting the post-hybri- dization washing stringency in a gradual series, differentiation between the genomes was detected according to the homology between the target genomes and the probes. The McGISH results indicate that the C, D and E genomes share a substantial amount of similar sequences, and differentiation between the D and C genomes of O. alta is less than that between the E genome and each of the C and D genomes. The differentiation within the C genomes of the diploid species (O. officinalis and O. eichingeri) and the C genome of O. alta was clearly discerned by McGISH, suggesting strongly that neither O. officinalis nor O. eichingeri was the direct C-genome donor of O. alta. The evidence of the GISH results also indicates that the E genome was considerably differentiated from the C and D genomes. Therefore, the E genome should not be the direct donor of O. alta; on the contrary, the E genome is closer to the C than to the D genome. McGISH is an efficient method in revealing the relationships among the genomes in question, particularly under the gradual stringent-washing condition.