Abstract
The effect of parameters of a binary mobile phase (chemical properties of components, gradient profile, flow rate, and pH) on the separation of peptides and proteins is theoretically investigated using a model of critical chromatography (model BioLCCC). It is demonstrated that the retention volume of peptides can be inverted by changing separation conditions.
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Tarasova, I.A., Gorshkov, A.V., Evreinov, V.V., Adams, A.K., Zubarev, R.A., and Gorshkov, M.V., Polymer Sci., Ser. A, 2008, vol. 50, no. 3, p. 309.
Perlova, T.Y., Goloborodko, A.A., Margolin, Y., Pridatchenko, M.L., Tarasova, I.A., Gorshkov, A.V., Moskovets, E., Ivanov, A.R., and Gorshkov, M.V., Proteomics, 2010, vol. 10, no. 19, p. 3458.
Pridatchenko, M.L., Perlova, T.Yu., Hamidabe, H.B., Goloborodko, A.A., Tarasova, I.A., Gorshkov, A.V., Evreinov, V.V., Tsybin, Y.O., and Gorshkov, M.V., Anal. Bioanal. Chem., 2012, vol. 402, no. 8, p. 2521.
Tarasova, I.A., Goloborodko, A.A., Perlova, T.Yu., Pridatchenko, M.L., Gorshkov, A.V., Evreinov, V.V., Ivanov, A.R., and Gorshkov, M.V., Anal. Chem., 2015, vol. 87. no. 13, p. 6562.
Gorshkov, A.V., Pridatchenko, M.L., Perlova, T.Yu., Tarasova, I.A., Gorshkov, M.V., and Evreinov, V.V., J. Anal. Chem., 2016, vol. 71, no. 1, p. 110.
Gorshkov, A.V., Evreinov, V.V., Pridatchenko, M.L., Tarasova, I.A., Filatova, N.N., Rozdina, I.G., and Gorshkov, M.V. Polymer Sci., Ser. A, 2011, vol. 53, no. 12, p. 1227.
Gorshkov A.V., Evreinov V.V., Tarasova I.A., and Gorshkov M.V., Polymer Sci., Ser. B, 2007, vol. 49, nos. 3−4, p. 93.
Gorshkov, A.V., Tarasova, I.A., Evreinov, V.V., Savitski, M.M., Nielsen, M.L., Zubarev, R.A., and Gorshkov, M.V., Anal. Chem., 2006, vol. 78, no. 22, p. 7770.
Palmblad, M., Ramstrom, M., Markides, K.E., Hakansson, P., and Bergquist, J., Anal. Chem., 2002, vol. 74, no. 22, p. 5826.
Strittmatter, E.F., Ferguson, P.L., Tang, K., and Smith, R.D., J. Am. Soc. Mass Spectrom., 2003, vol. 14, no. 9, p. 980.
Shi, Y., Xiang, R., Horvath, C., and Wilkins, J.A., J. Chromatogr. A, 2004, vol. 1053, nos. 1−2, p. 27.
Entelis, S.G., Evreinov, V.V., and Gorshkov, A.V., Adv. Polymer Sci., 1986, vol. 76, p. 129.
TheorChromo. http://theorchromo.ru. Cited October 3, 2015.
Pyteomics.biolccc 1.5.0 documentation. http:// pythonhosted.org/pyteomics.biolccc. Cited October 3, 2015.
Goloborodko, A.A., Levitsky, L.I., Ivanov, M.V., and Gorshkov, M.V., J. Am. Soc. Mass Spectrom., 2013, vol. 24, no. 2, p. 301.
Tarasova, I.A., Guryca, V., Pridatchenko, M.L., and Gorshkov, A.V., Kieffer-Jaquinod Evreinov, V.V., Masselon, C.D., and Gorshkov, M.V., J. Chromatogr. B: Anal. Technol. Biomed. Life Sci., 2009, vol. 877, no. 4, p. 433.
Guo, D., Mant, C.T., Taneja, A.K., Parker, J.M.R., and Hodges, R.S., J. Chromatogr. A, 1986, vol. 359, p. 499.
Hearn, M.T.W., Aguilar, M.I., Mant, C.T., and Hodges, R.S., J. Chromatogr. A, 1988, vol. 438, p. 197.
Mant, C.T., Lorne Burke, T.W.L., Zhou, N.E., Parker, J.M.R., and Hodges, R.S., J. Chromatogr. A, 1990, vol. 485, p. 365.
Koyama, J., Nomura, J., Shiojima, Y., Ohtsu, Y., and Horii, I., J. Chromatogr. A, 1992, vol. 625, no. 2, p. 217.
Snyder, L.R., Dolan, J.W., and Gant, J.R., J. Chromatogr. B: Biomed. Sci. Appl., 1979, vol. 165, p. 3.
Klammer, A.A., Yi, X., Maccoss, M.J., and Noble, W.S., Anal. Chem., 2007, vol. 79, no. 16, p. 6111.
Krokhin, O.V., Anal. Chem., 2006, vol. 78, no. 22, p. 7785.
Gilar, M., Xie, H., and Jaworski, A., Anal. Chem., 2010, vol. 82, no. 1, p. 265.
Sapirstein, H.D., Scanlon, M.G., and Bushuk, W., J. Chromatogr. A, 1989, vol. 469, p. 127.
Petritis, K., Kangas, L.J., Ferguson, P.L., and Anderson, G.A., Paša-Tolić, L., Lipton, M.S., Auberry, K.J., Strittmatter, E.F., Shen, Y., Zhao, R., and Smith, R.D., Anal. Chem., 2003, vol. 75, no. 5, p. 1039.
Azarova, I.N., Baram, G.I., and Gol’dberg, E.L., Russ. J. Bioorg. Chem., 2006, vol. 32, no. 1, p. 50.
Baczek, T., Wiczling, P., Marszall, M., Heyden, Y.V., and Kaliszan, R.J., J. Proteome Res., 2005, vol. 4, no. 2, p. 555.
Shinoda, K., Tomita, M., and Ishihama, Y., Bioinformatics, 2008, vol. 24, no. 14, p. 1590.
Tarasova, I.A., Perlova, T.Yu., Pridatchenko, M.L., Goloborodko, A.A., Levitskii, L.I., Evreinov, V.V., Guryca, V., Masselon, C.D., Gorshkov, A.V., and Gorshkov, M.V., J. Anal. Chem., 2012, vol. 67, no. 13, p. 1014.
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Original Russian Text © A.V. Gorshkov, M.L. Pridatchenko, T.Yu. Perlova, I.A. Tarasova, L.I. Levitsky, M.V. Gorshkov, V.V. Evreinov, 2016, published in Zhurnal Analiticheskoi Khimii, 2016, Vol. 71, No. 12, pp. 1279–1289.
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Gorshkov, A.V., Pridatchenko, M.L., Perlova, T.Y. et al. Applicability of the critical chromatography concept to proteomic problems. II. Effect of mobile phase on the separation of peptides and proteins taking into account the amino acid sequence. J Anal Chem 71, 1188–1197 (2016). https://doi.org/10.1134/S106193481610004X
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DOI: https://doi.org/10.1134/S106193481610004X