Abstract
Metabolic profiling is a key approach in current basic and applied research in biology. Comparative analysis of different metabolite extraction methods for pea (P. sativum) and black medick (M. lupulina) made it possible to find the optimal conditions for metabolite extraction and subsequent detection by gas chromatography coupled with mass spectrometry. The optimized method was shown to be reliable for assessment of the organ and species metabolic profiles for roots and leaves in pea and black medick plants.
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Oliver, S.G., Winson, M.K., Kell, D.B., and Baganz, F., Trends Biotechnol., 1998, vol. 16, no. 9, pp. 373–378.
Tweeddale, H., Notley-McRobb, L., and Ferenci, T., J. Bacteriol., 1998, vol. 180, no. 19, pp. 5109–5116.
Dalgliesh, C.E., Horning, E.C., Horning, M.G., Knox, K.L., and Yarger, K., Biochem. J., 1966, vol. 101, no. 3, pp. 792–810.
Horning, E.C. and Horning, M.G., Clin. Chem., 1971, vol. 17, no. 8, pp. 802–809.
Fiehn, O., Kopka, J., Trethewey, R.N., and Willmitzer, L., Anal. Chem., 2000, vol. 72, no. 15, pp. 3573–3580.
Roessner, U., Wagner, C., Kopka, J., Trethewey, R.N., and Willmitzer, L., Plant J., 2000, vol. 23, no. 1, pp. 131–142.
Dixon, R.A., Gang, D.R., Charlton, A.J., Fiehn, O., Kuiper, H.A., Reynolds, T.L., Tjeerdema, R.S., Jeffery, E.H., German, J.B., Ridley, W.P., and Seiber, J.N., J. Agric. Food Chem., 2006, vol. 54, no. 24, pp. 8984–8994.
Stewart, D., Shepherd, L.V.T., Hall, R.D., and Fraser, P.D., in Annual Plant Reviews, Biology of Plant Metabolomics, Hall, R.D., Ed., Oxford: Blackwell Publishing Ltd., 2011.
Puzanskiy, R.K., Yemelyanov V.V., Gavrilenko, T.A., and Shishova, M.F., Russ. J. Genet. Appl. Res., 2017, vol. 7, no. 7, pp. 744–756.
Choi, Y.H. and Verpoorte, R., Phytochem. Anal., 2014, vol. 25, no. 4, pp. 289–290.
Bijttebier, S., Van der Auwera, A., Foubert, K., Voorspoels, S., Pieters, L., and Apers, S., Anal. Chim. Acta, 2016, vol. 935, pp. 136–150.
Weckwerth, W., Metabolomics: Methods and Protocols (Methods in Molecular Biology), Weckwerth, W., Ed., Totowa, New Jersey: Humana Press Inc., 2007.
Qi, X., Chen, X., and Wang, Y., Plant Metabolomics: Methods and Applications, Qi, X., Chen, X., and Wang, Y., Eds., Beijing: Chemical Industry Press, 2010.
Barh, D., Khan, M.S., and Davies, E., PlantOmics: The Omics of Plant Science, Barh, D., Khan, M.S., and Davies, E., Eds., New Delhi: Springer, 2015.
Kotlova, E.R., Puzanskii, R.K., Danchul, T.Yu., Shagova, L.I., Pautova, I.A., and Shavarda, A.L., Rastit. Resur., 2016, vol. 52, no. 4, pp. 591–609.
Lee, D.Y. and Fiehn, O., Plant Methods, 2008, vol. 4, no. 1. e7.
Puzanskiy, R.K., Shavarda, A.L., Tarakhovskaya, E.R., and Shishova, M.F., Appl. Biochem. Microbiol., 2015, vol. 51, no. 1, pp. 83–94.
van Look, G., Simchen, G., and Heberle, J., Silylating, Agents, Derivatization Reagents. Protecting-Group Reagents. Organosilicon Compounds. Analytical Applications. Synthetic Applications, van Look, G., Simchen, G., and Heberle, J., Eds., Buchs, Switzerland: Fluka Chemie AG, 1995.
Lu, W., Su, X., Klein, M.S., Lewis, I.A., Fiehn, O., and Rabinowitz, J.D., Annu. Rev. Biochem., 2017, vol. 86, pp. 277–304.
Mushtaq, M.Y., Choi, Y.H., Verpoorte, R., and Wilson, E.G., Phytochem. Anal., 2014, vol. 25, no. 4, pp. 291–306.
Fiehn, O., Curr. Protoc. Mol. Biol., 2016. E114.30.4.1–30.4.32.
Schliemann, W., Ammer, C., and Strack, D., Phytochemistry, 2008, vol. 69, no. 1, pp. 112–146.
Engvild, K.C., Theor. Appl. Genet., 1987, vol. 74, no. 6, pp. 711–713.
Hoagland, D.R. and Arnon, D.I., The Water Culture Method for Growing Plants without Soil. California Agricultural Experiment Station Circulation, Hoagland, D.R. and Arnon, D.I., Eds., Berkley, California: College of Agriculture University of California, 1938, vol.347.
Yurkov, A.P., Jacobi, L.M., Gapeeva, N.E., Stepanova, G.V., and Shishova, M.F., Russ. J. Dev. Biol., 2015, vol. 46, no. 5, pp. 263–275.
Barsch, A., Tellstroem, V., Patschkowski, T., Kuster, H., and Niehaus, K., Mol. Plant Microbe Interact., 2006, vol. 19, no. 9, pp. 998–1013.
Leo, A., Hansch, C., and Elkins, D., Chem. Rev., 1971, vol. 71, no. 6, pp. 525–616.
Shtark, O.Y., Borisov, A.Y., Zhukov, V.A., Provorov, N.A., and Tikhonovich, I.A., in Soil Microbiology and Sustainable Crop Production, Dixon, G.R. and Tilston, E.L., Eds., Dordrecht, Netherlands: Springer Science, Business Media, 2010.
Shtark, O.Y., Borisov, A.Y., Zhukov, V.A., and Tikhonovich, I.A., Symbiosis, 2012, vol. 57, no. 3, pp. 51–62.
Lüscher, A., Mueller-Harvey, I., Soussana, J.F., Rees, R.M., and Peyraud, J.L., Grass Forage Sci., 2014, vol. 69, no. 2, pp. 206–228.
Huhman, D.V., Berhow, M.A., and Sumner, L.W., J. Agric. Food Chem., 2005, vol. 53, no. 6, pp. 1914–1920.
Aranjuelo, I., Tcherkez, G., Molero, G., Gilard, F., Avice, J.C., and Nogues, S., J. Exp. Bot., 2013, vol. 64, no. 4, pp. 885–897.
Poincelot, R.P., Plant Physiol., 1976, vol. 58, no. 4, pp. 595–598.
Larsson, C. and Møller, I.M., in The Plant Plasma Membrane: Structure, Function and Molecular Biology, Larsson, C. and Møller, I.M., Eds., Berlin: Springer-Verlag, 1990.
Rochester, C.P., Kjellbom, P., Andersson, B., and Larsson, C., Arch. Biochem. Biophys., 1987, vol. 255, no. 2, pp. 385–391.
Schmitz, O., Danneberg, G., Hundeshagen, B., Klingner, A., and Bothe, H., J. Plant Physiol., 1991, vol. 139, no. 1, pp. 106–114.
Gresshoff, P.M., Hayashi, S., Biswas, B., Mirzaei, S., Indrasumunar, A., Reid, D., Samuel, S., Tollenaere, A., van Hameren, B., Hastwell, A., Scott, P., and Ferguson, B.J., J. Plant Physiol., 2014, vol. 172, no. 1, pp. 128–136.
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Original Russian Text © R.K. Puzanskiy, V.V. Yemelyanov, M.S. Kliukova, A.L. Shavarda, O.Yu. Shtark, A.P. Yurkov, M.F. Shishova, 2018, published in Prikladnaya Biokhimiya i Mikrobiologiya, 2018, Vol. 54, No. 4.
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Puzanskiy, R.K., Yemelyanov, V.V., Kliukova, M.S. et al. Optimization of Metabolite Profiling for Black Medick (Medicago lupulina) and Peas (Pisum sativum). Appl Biochem Microbiol 54, 442–448 (2018). https://doi.org/10.1134/S0003683818040129
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DOI: https://doi.org/10.1134/S0003683818040129