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1H, 13C, and 15N resonance assignments for the pro-inflammatory cytokine interleukin-36α

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Abstract

Interleukin-36α (IL-36α) is a recently characterised member of the interleukin-1 superfamily. It is involved in the pathogenesis of inflammatory arthritis in one third of psoriasis patients. By binding of IL-36α to its receptor IL-36R via the NF-κB pathway other cytokines involved in inflammatory and apoptotic cascade are activated. The efficacy of complex formation is controlled by N-terminal processing. To obtain a more detailed view on the structure function relationship we performed a heteronuclear multidimensional NMR investigation and here report the 1H, 13C, and 15N resonance assignments for the backbone and side chain nuclei of the pro-inflammatory cytokine interleukin-36α.

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References

  • Afonina IS, Muller C, Martin SJ, Beyaert R (2015) Proteolytic processing of interleukin-1 family cytokines: variations on a common theme. Immunity 42:991–1004. doi:10.1016/j.immuni.2015.06.003

    Article  Google Scholar 

  • Bax A, Ikura M (1991) An efficient 3D NMR technique for correlating the proton and 15 N backbone amide resonances with the alpha-carbon of the preceding residue in uniformly 15 N/13C enriched proteins. J Biomol NMR 1:99–104

    Article  Google Scholar 

  • Clubb RT, Thanabal V, Wagner G (1992) A constant-time 3-Dimensional triple-resonance pulse scheme to correlate intraresidue H-1(N), N-15, and C-13′ Chemical-Shifts in N-15-C-13-Labeled Proteins. J Magn Reson 97:213–217

    ADS  Google Scholar 

  • Gabay C, Towne JE (2015) Regulation and function of interleukin-36 cytokines in homeostasis and pathological conditions. J Leukoc Biol 97:645–652. doi:10.1189/jlb.3RI1014-495R

    Article  Google Scholar 

  • Garlanda C, Dinarello CA, Mantovani A (2013) The interleukin-1 family: back to the future. Immunity 39:1003–1018. doi:10.1016/j.immuni.2013.11.010

    Article  Google Scholar 

  • Grzesiek S, Bax A (1993) Amino acid type determination in the sequential assignment procedure of uniformly 13C/15N-enriched proteins. J Biomol NMR 3:185–204

    Google Scholar 

  • Hafsa NE, Arndt D, Wishart DS (2015) CSI 3.0: a web server for identifying secondary and super-secondary structure in proteins using NMR chemical shifts. Nucleic Acids Res 43:W370–W377. doi:10.1093/nar/gkv494

    Article  Google Scholar 

  • Henry CM, Sullivan GP, Clancy DM, Afonina IS, Kulms D, Martin SJ (2016) Neutrophil-derived proteases escalate inflammation through activation of IL-36 family cytokines. Cell Rep 14:708–722. doi:10.1016/j.celrep.2015.12.072

    Article  Google Scholar 

  • Kay LE, Ikura M, Bax A (1990a) Proton-proton correlation via carbon carbon couplings—a 3-dimensional NMR approach for the assignment of aliphatic resonances in proteins labeled with C-13. J Am Chem Soc 112:888–889

    Article  Google Scholar 

  • Kay LE, Ikura M, Tschudin R, Bax A (1990b) 3-Dimensional triple-resonance NMR-spectroscopy of isotopically enriched proteins. J Magn Reson 89:496–514

    ADS  Google Scholar 

  • Kay LE, Guang-Yi X, Singer AU, Muhandiram DR, Forman-Kay JD (1993) A gradient-enhanced HCCH-TOCSY experiment for recording side-chain 1H and 13C correlations in H2O samples for proteins. J Magn Reson B 101:333–337

    Article  ADS  Google Scholar 

  • Saha SS et al (2015) Signal transduction and intracellular trafficking by the interleukin 36 receptor. J Biol Chem 290:23997–24006. doi:10.1074/jbc.M115.653378

    Article  Google Scholar 

  • Schubert M, Labudde D, Oschkinat H, Schmieder P (2002) A software tool for the prediction of Xaa-Pro peptide bond conformations in proteins based on 13C chemical shift statistics. J Biomol NMR 24:149–154

    Article  Google Scholar 

  • Sims JE, Smith DE (2010) The IL-1 family: regulators of immunity. Nat Rev Immunol 10:89–102. doi:10.1038/nri2691

    Article  Google Scholar 

  • Vranken WF et al (2005) The CCPN data model for NMR spectroscopy: development of a software pipeline. Proteins 59:687–696. doi:10.1002/prot.20449

    Article  Google Scholar 

  • Vuister GW, Bax A (1993) Quantitative J correlation—a new approach for measuring homonuclear 3-bond J(H(N)H(Alpha) coupling-constants in N-15-enriched proteins. J Am Chem Soc 115:7772–7777

    Article  Google Scholar 

  • Wittekind M, Mueller L (1993) HNCACB: a high-sensitivity 3D NMR experiment to correlate amide proton and nitrogen resonances with the alpha-carbon and beta-carbon resonances in proteins. J Magn Reson B 101:201–205

    Article  Google Scholar 

Download references

Acknowledgments

Financial support by the Deutsche Forschungsgemeinschaft (DFG) within FOR 1738 (to D.I. and O.O.) is gratefully acknowledged. This work was partially supported by the BMBF network ProNet-T3 “Protein competence center Halle: tools, targets & therapeutics”. The FLI is a member of the Leibniz Association (WGL) and is financially supported by the Federal Government of Germany and the State of Thuringia.

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Correspondence to Oliver Ohlenschläger.

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Dedicated to Heinrich Rüterjans on the occasion of his 80th birthday.

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Goradia, N., Wißbrock, A., Wiedemann, C. et al. 1H, 13C, and 15N resonance assignments for the pro-inflammatory cytokine interleukin-36α. Biomol NMR Assign 10, 329–333 (2016). https://doi.org/10.1007/s12104-016-9694-7

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  • DOI: https://doi.org/10.1007/s12104-016-9694-7

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