Abstract
Occasionally, a mutation in an exposed loop region causes a significant change in protein function and/or stability. A single mutation Gly67Val of E. coli dihydrofolate reductase (DHFR) in the exposed CD loop is such an example. We have carried out the chemical shift assignments for HN, NH, Cα and Cβ atoms of the Gly67Val mutant of E. coli DHFR complexed with folate at pH 7.0, 35 °C, and then evaluated the HN, NH, Cα and Cβ chemical shift changes caused by the mutation. The result indicates that, while the overall secondary structure remains the same, the single mutation Gly67Val causes site-specific conformational changes of the polypeptide backbone restricted around the adenosine-binding subdomain (residues 38–88) and not in the distant catalytic domain.
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Bolin JT, Filman DJ, Matthews DA, Hamlin RC, Kraut J (1982) Crystal structures of Escherichia coli and Lactobacillus casei dihydrofolate reductase refined at 1.7 Å resolution. J Biol Chem 257:13650–13662
Bystroff C, Kraut J (1991) Crystal structure of unliganded Escherichia coli dihydrofolate reductase: ligand-induced conformational changes and cooperativity in binding. Biochemistry 30:2227–2239
Bystroff C, Oatley SJ, Kraut J (1990) Crystal structures of Escherichia coli dihydrofolate reductase: the NADP+ holoenzyme and the folate-NADP+ ternary complex. Substrate binding and a model for the transition state. Biochemistry 29:3263–3277
Delaglio F, Grzesiek S, Vuister GW, Zhu G, Pfeifer J, Bax A (1995) NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J Biomol NMR 6:277–293
Fierke CA, Johnson KA, Benkovic SJ (1987) Construction and evaluation of the kinetic scheme associated with dihydrofolate reductase from Escherichia coli. Biochemistry 26:4085–4092
Hedstrom L, Szilagyi L, Rutter WJ (1992) Converting trypsin to chymotrypsin: the role of surface loops. Science 255:1249–1253
Kato H, Tanaka T, Yamaguchi H, Hara T, Nishioka T, Katsube Y, Oda J (1994) Flexible loop that is novel catalytic machinery in a ligase. Atomic structure and function of the loopless glutathione synthetase. Biochemistry 33:4995–4999
Li L, Falzone CJ, Wright PE, Benkovic SJ (1992) Functional role of a mobile loop of Escherichia coli dihydrofolate reductase in transition-state stabilization. Biochemistry 32:7826–7833
Ohmae E, Iriyama K, Ichihara S, Gekko K (1996) Effects of point mutations at the flexible loop glycine-67 of Escherichia coli dihydrofolate reductase on its stability and function. J Biochem 119(4):703–710
Schnell JR, Dyson HJ, Wright PE (2004) Structure, dynamics and catalytic activity of Dihydrofolate reductase. Annu Rev Biophys Biomol Struct 33:119–140
Schwarzinger S, Kroon GJA, Foss TR, Chung J, Wright PE, Dyson HJ (2001) Sequence-dependent correlation of random coil NMR chemical shifts. J Am Chem Soc 123:2970–2978
Tanaka T, Kato H, Nishida T, Oda J (1992) Mutational and proteolytic studies on a flexible loop in glutathione synthetase from Escherichia coli B: the loop and arginine 233 are critical for the catalytic reaction. Biochemistry 31:2259–2265
Tanaka T, Yamaguchi H, Kato H, Nishioka T, Katsube Y, Oda J (1993) Flexibility impaired by mutations revealed the multifunctional roles of the loop in glutathione synthetase. Biochemistry 32:12398–12404
Vranken WF, Boucher W, Stevens TJ, Fogh RH, Pajon A, Llinas M, Ulrich EL, Markley JL, Ionides J, Laue ED (2005) The CCPN data model for NMR spectroscopy: development of a software pipeline. Proteins 59(4):687–696
Wishart DS, Sykes BD, Richards FM (1992) The chemical shift index: a fast and simple method for the assignment of protein secondary structure through NMR spectroscopy. Biochemistry 31(6):1647–1651
Wishart DS, Sykes BD (1994) The 13C chemical-shift index: a simple method for the identification of protein secondary structure using 13C chemical-shift data. J Biomol NMR. 4(2):171–180
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This work was supported by the Academic Frontier Program 07F010 of the Ministry of Education, Culture, Sports, Science and Technology of Japan.
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Sunilkumar Puthenpurackal Narayanan and Akihiro Maeno have contributed equally to this work.
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Puthenpurackal Narayanan, S., Maeno, A., Wada, Y. et al. Sequential backbone resonance assignments of the E. coli dihydrofolate reductase Gly67Val mutant: folate complex. Biomol NMR Assign 10, 125–129 (2016). https://doi.org/10.1007/s12104-015-9650-y
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DOI: https://doi.org/10.1007/s12104-015-9650-y