Abstract
As multienzyme complexes, cellulosomes hydrolyze cellulosic biomass with high efficiency, which is believed to be attributed to either one or both factors: (1) synergy among the catalytic and substrate-binding entities and (2) the large size of cellulosome complexes. Although the former factor has been extensively documented, the correlation between size and specific activity of cellulosomes is still elusive to date. In this study, primary and secondary scaffoldins with 1, 3, or 5 copies of type I/II cohesin domains were recombinantly synthesized and various cellulosomes carrying 1, 3, 5, 9, 15, or 25 molecules of cellulase mixtures of family 5, 9, and 48 glycoside hydrolases were assembled. In addition, the assembled complex was annexed to cellulose with the aid of a family 3a carbohydrate-binding module (CBM3a). Measuring cellulolytic hydrolysis activities of assembled cellulosomes on crystalline Avicel revealed that higher degree of cellulosome complexity resulted in more efficient cellulose hydrolysis with plateaued synergic effects after the cellulosome size reaches certain degree.
Similar content being viewed by others
References
Menzella, H. G., Reid, R., Carney, J. R., Chandran, S. S., Reisinger, S. J., Patel, K. G., Hopwood, D. A., & Santi, D. V. (2005). Combinatorial polyketide biosynthesis by de novo design and rearrangement of modular polyketide synthase genes. Nature Biotechnology, 23(9), 1171–1176.
Jenni, S., Leibundgut, M., Boehringer, D., Frick, C., Mikolásek, B., & Ban, N. (2007). Structure of fungal fatty acid synthase and implications for iterative substrate shuttling. Science, 316(5822), 254–261.
Pröschel, M., Detsch, R., Boccaccini, A. R., & Sonnewald, U. (2015). Engineering of metabolic pathways by artificial enzyme channels. Frontiers in Bioengineering and Biotechnology, 3, 168.
Agapakis, C. M., Boyle, P. M., & Silver, P. A. (2012). Natural strategies for the spatial optimization of metabolism in synthetic biology. Nature Chemical Biology, 8(6), 527–535.
Lee, H., DeLoache, W. C., & Dueber, J. E. (2012). Spatial organization of enzymes for metabolic engineering. Metabolic Engineering, 14(3), 242–251.
Dueber, J. E., Wu, G. C., Malmirchegini, G. R., Moon, T. S., Petzold, C. J., Ullal, A. V., Prather, K. L., & Keasling, J. D. (2009). Synthetic protein scaffolds provide modular control over metabolic flux. Nature Biotechnology, 27(8), 753–739.
You, C., & Zhang, Y. H. P. (2013). Annexation of a high-activity enzyme in a synthetic three-enzyme complex greatly decreases the degree of substrate channeling. ACS Synthetic Biology, 3(6), 380–386.
Sun, Q., & Chen, W. (2016). HaloTag mediated artificial cellulosome assembly on a rolling circle amplification DNA template for efficient cellulose hydrolysis. Chemical Communications, 52(40), 6701–6704.
Doi, R. H., & Kosugi, A. (2004). Cellulosomes: plant-cell-wall-degrading enzyme complexes. Nature Reviews Microbiology, 2(7), 541–551.
Fontes, C. M., & Gilbert, H. J. (2010). Cellulosomes: highly efficient nanomachines designed to deconstruct plant cell wall complex carbohydrates. Annual Review of Biochemistry, 79(1), 655–681.
Artzi, L., Bayer, E. A., & Moraïs, S. (2017). Cellulosomes: bacterial nanomachines for dismantling plant polysaccharides. Nature Reviews Microbiology, 15(2), 83–95.
Dror, T. W., Rolider, A., Bayer, E. A., Lamed, R., & Shoham, Y. (2003). Regulation of expression of scaffoldin-related genes in Clostridium thermocellum. Journal of Bacteriology, 185(17), 5109–5116.
Xu, Q., Gao, W., Ding, S. Y., Kenig, R., Shoham, Y., Bayer, E. A., & Lamed, R. (2003). The cellulosome system of Acetivibrio cellulolyticus includes a novel type of adaptor protein and a cell surface anchoring protein. Journal of Bacteriology, 185(15), 4548–4557.
Xu, Q., Bayer, E. A., Goldman, M., Kenig, R., Shoham, Y., & Lamed, R. (2004). Architecture of the Bacteroides cellulosolvens cellulosome: description of a cell surface-anchoring scaffoldin and a family 48 cellulase. Journal of Bacteriology, 186(4), 968–977.
Artzi, L., Dassa, B., Borovok, I., Shamshoum, M., Lamed, R., & Bayer, E. A. (2014). Cellulosomics of the cellulolytic thermophile Clostridium clariflavum. Biotechnology for Biofuels, 7(1), 100.
Coughlan, M. P., Hon-Nami, K., Hon-Nami, H., Ljungdahl, L. G., Paulin, J. J., & Rigsby, W. E. (1985). The cellulolytic enzyme complex of Clostridium thermocellum is very large. Biochemical and Biophysical Research Communications, 130(2), 904–909.
Felix, C. R., & Ljungdahl, L. G. (1993). The cellulosome: the exocellular organelle of Clostridium. Annual Review of Microbiology, 47(1), 791–819.
Lynd, L. R., Weimer, P. J., Van Zyl, W. H., & Pretorius, I. S. (2002). Microbial cellulose utilization: fundamentals and biotechnology. Microbiology and Molecular Biology Reviews, 66(3), 506–577.
Zverlov, V. V., Klupp, M., Krauss, J., & Schwarz, W. H. (2008). Mutations in the scaffoldin gene, cipA, of Clostridium thermocellum with impaired cellulosome formation and cellulose hydrolysis: insertions of a new transposable element, IS1447, and implications for cellulase synergism on crystalline cellulose. Journal of Bacteriology, 190(12), 4321–4327.
Fierobe, H. P., Bayer, E. A., Tardif, C., Czjzek, M., Mechaly, A., Bélaıch, A., Lamed, R., Shoham, Y., & Bélaıch, J. P. (2002). Degradation of cellulose substrates by cellulosome chimeras substrate targeting versus proximity of enzyme components. The Journal of Biological Chemistry, 277(51), 49621–49630.
Murashima, K., Kosugi, A., & Doi, R. H. (2002). Synergistic effects on crystalline cellulose degradation between cellulosomal cellulases from Clostridium cellulovorans. Journal of Bacteriology, 184(18), 5088–5095.
Fierobe, H. P., Mechaly, A., Tardif, C., Belaich, A., Lamed, R., Shoham, Y., Belaich, J. P., & Bayer, E. A. (2001). Design and production of active cellulosome chimeras selective incorporation of dockerin-containing enzymes into defined functional complexes. The Journal of Biological Chemistry, 276(24), 21257–21261.
Fierobe, H. P., Mingardon, F., Mechaly, A., Be, A., Rincon, M. T., Lamed, R., Tardif, C., Be, J., & Bayer, E. A. (2005). Action of designer cellulosomes on homogeneous versus complex substrates. The Journal of Biological Chemistry, 280(16), 16325–16334.
Tsai, S. L., Oh, J., Singh, S., Chen, R., & Chen, W. (2009). Functional assembly of minicellulosomes on the Saccharomyces cerevisiae cell surface for cellulose hydrolysis and ethanol production. Applied and Environmental Microbiology, 75(19), 6087–6093.
Krauss, J., Zverlov, V. V., & Schwarz, W. H. (2012). In vitro reconstitution of the complete Clostridium thermocellum cellulosome and synergistic activity on crystalline cellulose. Applied and Environmental Microbiology, 78(12), 4301–4307.
Srikrishnan, S., Chen, W., & Da Silva, N. A. (2013). Functional assembly and characterization of a modular xylanosome for hemicellulose hydrolysis in yeast. Biotechnology and Bioengineering, 110(1), 275–285.
Tsai, S. L., Park, M., & Chen, W. (2013). Size-modulated synergy of cellulase clustering for enhanced cellulose hydrolysis. Biotechnology Journal, 8(2), 257–261.
Moraïs, S., Barak, Y., Hadar, Y., Wilson, D. B., Shoham, Y., Lamed, R., & Bayer, E. A. (2011). Assembly of xylanases into designer cellulosomes promotes efficient hydrolysis of the xylan component of a natural recalcitrant cellulosic substrate. MBio, 2, e00233.
Moraïs, S., Morag, E., Barak, Y., Goldman, D., Hadar, Y., Lamed, R., Shoham, Y., Wilson, D. B., & Bayer, E. A. (2012). Deconstruction of lignocellulose into soluble sugars by native and designer cellulosomes. MBio, 3, e00508.
Xu, Q., Ding, S. Y., Brunecky, R., Bomble, Y. J., Himmel, M. E., & Baker, J. O. (2013). Improving activity of minicellulosomes by integration of intra- and intermolecular synergies. Biotechnology for Biofuels, 6(1), 126–129.
Zhang, X. Z., Sathitsuksanoh, N., & Zhang, Y. H. P. (2010). Glycoside hydrolase family 9 processive endoglucanase from Clostridium phytofermentans: heterologous expression, characterization, and synergy with family 48 cellobiohydrolase. Bioresource Technology, 101(14), 5534–5538.
Miller, G. L. (1959). Use of dinitrosalicylic acid reagent for determination of reducing sugar. Analytical Chemistry, 31(3), 426–428.
Currie, D. H., Herring, C. D., Guss, A. M., Olson, D. G., Hogsett, D. A., & Lynd, L. R. (2013). Functional heterologous expression of an engineered full length CipA from Clostridium thermocellum in Thermoanaerobacterium saccharolyticum. Biotechnology for Biofuels, 6(1), 32.
Wilson, C. M., Rodriguez, J. M., Johnson, C. M., Martin, S. L., Chu, T. Z., Wolfinger, R. D., Hauser, L. J., Land, M. L., Klingeman, D. M., Syed, M. H., Ragauskas, A. J., Tschaplinski, T. J., Mielenz, J. R., & Brown, S. D. (2013). Global transcriptome analysis of Clostridium thermocellum ATCC 27405 during growth on dilute acid pretreated Populus and switchgrass. Biotechnology for Biofuels, 6(1), 179.
Van Dyk, J. S., & Pletschke, B. I. (2012). A review of lignocellulose bioconversion using enzymatic hydrolysis and synergistic cooperation between enzymes-factors affecting enzymes, conversion and synergy. Biotechnology Advances, 30(6), 1458–1480.
Liao, H., Zhang, X. Z., Rollin, J. A., & Zhang, Y. H. P. (2011). A minimal set of bacterial cellulases for consolidated bioprocessing of lignocellulose. Biotechnology Journal, 6(11), 1409–1418.
Zhang, Y. H. P., & Lynd, L. R. (2005). Cellulose utilization by Clostridium thermocellum: bioenergetics and hydrolysis product assimilation. Proceedings of the National Academy of Sciences of the United States of America, 102(20), 7321–7325.
Lu, Y., Zhang, Y. H., & Lynd, L. R. (2006). Enzyme-microbe synergy during cellulose hydrolysis by Clostridium thermocellum. Proceedings of the National Academy of Sciences of the United States of America, 103(44), 16165–16169.
Raman, B., Pan, C., Hurst, G. B., Rodriguez, J. M., McKeown, C. K., Lankford, P. K., Samatova, N. F., & Mielenz, J. R. (2009). Impact of pretreated switchgrass and biomass carbohydrates on Clostridium thermocellum ATCC 27405 cellulosome composition: a quantitative proteomic analysis. PLoS One, 4(4), e5271.
Olson, D. G., Tripathi, S. A., Giannone, R. J., Lo, J., Caiazza, N. C., Hogsett, D. A., Hettich, R. L., Guss, A. M., Dubrovsky, G., & Lynd, L. R. (2010). Deletion of the Cel48S cellulase from Clostridium thermocellum. Proceedings of the National Academy of Sciences of the United States of America, 107(41), 17727–17732.
Kruus, K., Wang, W. K., Ching, J., & Wu, J. H. (1995). Exoglucanase activities of the recombinant Clostridium thermocellum CelS, a major cellulosome component. Journal of Bacteriology, 177(6), 1641–1644.
Tolonen, A. C., Chilaka, A. C., & Church, G. M. (2009). Targeted gene inactivation in Clostridium phytofermentans shows that cellulose degradation requires the family 9 hydrolase Cphy3367. Molecular Microbiology, 74(6), 1300–1313.
Zhang, X. Z., Sathitsuksanoh, N., Zhu, Z., & Percival Zhang, Y. H. (2011). One-step production of lactate from cellulose as the sole carbon source without any other organic nutrient by recombinant cellulolytic Bacillus subtilis. Metabolic Engineering, 13(4), 364–372.
Wittig, I., Beckhaus, T., Wumaier, Z., Karas, M., & Schägger, H. (2010). Mass estimation of native proteins by blue native electrophoresis principles and practical hints. Molecular & Cellular Proteomics, 9(10), 2149–2161.
Hirano, K., Kurosaki, M., Nihei, S., Hasegawa, H., Shinoda, S., Haruki, M., & Hirano, N. (2016). Enzymatic diversity of the Clostridium thermocellum cellulosome is crucial for the degradation of crystalline cellulose and plant biomass. Scientific Reports, 6(1), 35709.
Funding
This research was supported by National Science Foundation (CBET 1265044).
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
Conflict of Interest
The authors declare that they have no conflict of interest.
Electronic Supplementary Material
ESM 1
(DOCX 94 kb)
Rights and permissions
About this article
Cite this article
Chen, L., Ge, X. Correlation Between Size and Activity Enhancement of Recombinantly Assembled Cellulosomes. Appl Biochem Biotechnol 186, 937–948 (2018). https://doi.org/10.1007/s12010-018-2786-3
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s12010-018-2786-3