Skip to main content
Log in

Effect of plant-based carbon source supplements on denitrification of synthetic wastewater: focus on the microbiology

  • Research Article
  • Published:
Environmental Science and Pollution Research Aims and scope Submit manuscript

Abstract

The effects of plant-based carbon source addition on wastewater NO3-N removal and the involved microorganisms, especially denitrifying bacteria, were investigated. A synthetic wastewater (NO3-N, 15 mg/L) was treated through the batch experiment, which included three inoculation cycles (7 days/cycle), and was conducted at 25 °C. Four natural plant substrates, namely, rice straw (RS), wheat straw (WS), ryegrass (RG), and reed (RD), were used as carbon sources and supplemented at the rate of 1% (w/v). The results showed that both RS and WS performed well in promoting NO3-N removal (79.55–97.07%). While RG removed only 22.08% of NO3-N in the first cycle, the removal efficiency increased afterward (86.09–95.82%). Conversely, the NO3-N removal rate of RD decreased from 95.10 to 24.77% as a result of its low ability to supply carbon. With respect to the microorganisms, the RS treatment resulted in more bacteria and denitrifying genes such as narG, nirK, nirS, and norB than other treatments, while the highest number of nosZ gene copies was recorded in the WS treatment. Sequencing results revealed that Firmicutes (18.19–56.96%), Proteobacteria (38.82–74.80%), and Bacteroidetes (3.15–4.15%) were three dominant bacterial phyla for RS, WS, and RD treatments. Furthermore, the genera Enterobacter, Massilia, and Bacillus were the main denitrifying bacteria participating in the NO3-N removal. Furthermore, correlation analysis indicated that the denitrifying genus Sphingobacterium played an important role in enhancing nitrogen removal. This study suggested that RS is the superior plant-based carbon source for denitrifying bioreactors used in agricultural runoff treatment.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6.

Similar content being viewed by others

References

  • Abbott DW, Boraston AB (2008) Structural biology of pectin degradation by Enterobacteriaceae. Microbiol Mol Biol R 72:301–316

    CAS  Google Scholar 

  • Biddle JF, Fitz-Gibbon S, Schuster SC, Brenchley JE, House CH (2008) Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment. PNAS 105:10583–10588

    CAS  Google Scholar 

  • Cameron SG, Schipper LA (2010) Nitrate removal and hydraulic performance of organic carbon for use in denitrification beds. Ecol Eng 36:1588–1595

    Google Scholar 

  • Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Pena AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Tumbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R (2010) QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7:335–336

    CAS  Google Scholar 

  • Chen Z, Liu JB, Wu MN, Xie XL, Wu JS, Wei WX (2012) Differentiated response of denitrifying communities to fertilization regime in paddy soil. Microb Ecol 63:446–459

    Google Scholar 

  • Chen SM, Wang FH, Zhang YM, Qin SP, Wei SC, Wang SQ, Hu CS, Liu BB (2018) Organic carbon availability limiting microbial denitrification in the deep vadose zone. Environ Microbiol 20:980–992

    CAS  Google Scholar 

  • Coyne MS, Arunakumari A, Averill BA, Tiedje JM (1989) Immunological identification and distribution of dissimilatory heme cd1 and non-heme copper nitrite reductases in denitrifying bacteria. Appl Environ Microbiol 55:2924–2931

    CAS  Google Scholar 

  • Ding XW, Xue Y, Zhao Y, Xiao WH, Liu Y, Liu JG (2018) Effects of different covering systems and carbon nitrogen ratios on nitrogen removal in surface flow constructed wetlands. J Clean Prod 172:541–551

    CAS  Google Scholar 

  • Dworkin M, Falkow S, Rosenberg E, Schleifer KH, Stackebrandt E (2006) The prokaryotes volume 4: bacteria: Firmicutes, Cyanobacteria. Springer, New York, pp 530–609

    Google Scholar 

  • Fierer N, Bradford MA, Jackson RB (2007) Toward an ecological classification of soil bacteria. Ecology 88:1354–1364

    Google Scholar 

  • Fu DF, Gong WJ, Xu Y, Singh RP, Surampalli RY, Zhang TC (2014) Nutrient mitigation capacity of agricultural drainage ditches in Tai lake basin. Ecol Eng 71:101–107

    Google Scholar 

  • Gibert O, Pomierny S, Rowe I, Kalin RM (2008) Selection of organic substrates as potential reactive materials for use in a denitrification permeable reactive barrier (PRB). Bioresour Technol 99:7587–7596

    CAS  Google Scholar 

  • Greenan CM, Moorman TB, Kaspar TC, Parkin TB, Jaynes DB (2006) Comparing carbon substrates for denitrification of subsurface drainage water. J Environ Qual 35:824

  • Grimont F, Grimont PAD (2006) The genus Enterobacter. In: Dworkin M, Falkow S, Rosenberg E, Schleifer KH, Stackebrandt E (eds) The prokaryotes volume 6: Proteobacteria: Gamma subclass. Springer, New York, pp 197–214

    Google Scholar 

  • Han F, Wei D, Ngo HH, Guo W, Xu W, Du B, Wei Q (2018a) Performance, microbial community and fluorescent characteristic of microbial products in a solid-phase denitrification biofilm reactor for WWTP effluent treatment. J Environ Manag 227:375–385

    CAS  Google Scholar 

  • Han F, Ye W, Wei D, Xu W, Du B, Wei Q (2018b) Simultaneous nitrification-denitrification and membrane fouling alleviation in a submerged biofilm membrane bioreactor with coupling of sponge and biodegradable PBS carrier. Bioresour Technol 270:156–165

    CAS  Google Scholar 

  • Hao R, Li S, Li J, Meng C (2013) Denitrification of simulated municipal wastewater treatment plant effluent using a three-dimensional biofilm-electrode reactor: operating performance and bacterial community. Bioresource Technol. 143:178–186

  • Harter J, Weigold P, El-Hadidi M, Huson DH, Kappler A, Behrens S (2016) Soil biochar amendment shapes the composition of N2O-reducing microbial communities. Sci Total Environ 562:79–390

    Google Scholar 

  • He D, Ren LJ, Wu QLL (2014) Contrasting diversity of epibiotic bacteria and surrounding bacterioplankton of a common submerged macrophyte, Potamogeton crispus, in freshwater lakes. FEMS Microbiol Ecol 90:551–562

    CAS  Google Scholar 

  • Hrynkiewicz K, Baum C, Leinweber P (2010) Density, metabolic activity, and identity of cultivable rhizosphere bacteria on Salix viminalis in disturbed arable and landfill soils. J Plant Nutr Soil Sci 173:747–756

    CAS  Google Scholar 

  • Jiao S, Liu ZS, Lin YB, Yang J, Chen WM, Wei GH (2016) Bacterial communities in oil contaminated soils: biogeography and co-occurrence patterns. Soil Biol Biochem 98:64–73

    CAS  Google Scholar 

  • Khan ST, Horiba Y, Yamamoto M, Hiraishi A (2002) Members of the family Comamonadaceae as primary poly (3-hydroxybutyrate-co-3-hydroxyvalerate)-degrading denitrifiers in activated sludge as revealed by a polyphasic approach. Appl Microbiol Biotechnol 68:3206–3214

    CAS  Google Scholar 

  • Kim JK, Park KJ, Cho KS, Nam SW, Park TJ, Bajpai R (2005) Aerobic nitrification-denitrification by heterotrophic Bacillus strains. Bioresour Technol 96:1897–1906

    CAS  Google Scholar 

  • Kroger R, Scott JT, Czarnecki JMP (2014) Denitrification potential of low-grade weirs and agricultural drainage ditch sediments in the Lower Mississippi Alluvial Valley. Ecol Eng 73:168–175

    Google Scholar 

  • Li CY, Wu SB, Dong RJ (2015) Dynamics of organic matter, nitrogen and phosphorus removal and their interactions in a tidal operated constructed wetland. J Environ Manag 151:310–316

    CAS  Google Scholar 

  • Liu F, Wang Y, Xiao RL, Wu JS, Li Y, Zhang SN, Wang D, Li HF, Chen L (2015a) Influence of substrates on nutrient removal performance of organic channel barriers in drainage ditches. J Hydrol 527:380–386

    CAS  Google Scholar 

  • Liu YL, Yuan YX, Li X, Kang XR, Du MA (2015b) Succession of bacterial community in anaerobic-anoxic-aerobic (A2O) bioreactor using sludge fermentation liquid as carbon source. Desalin Water Treat 54:1061–1069

    CAS  Google Scholar 

  • Moore MT, Kroger R, Locke MA, Cullum RF, Steinriede RW, Testa S, Lizotte RE, Bryant CT, Cooper CM (2010) Nutrient mitigation capacity in Mississippi Delta, USA drainage ditches. Environ Pollut 158:175–184

    CAS  Google Scholar 

  • Ofek M, Hadar Y, Minz D (2012) Ecology of root colonizing Massilia (Oxalobacteraceae). PLoS One 7:e40117

    CAS  Google Scholar 

  • Padhi SK, Tripathy S, Mohanty S, Maiti NK (2017) Aerobic and heterotrophic nitrogen removal by Enterobacter cloacae CF-S27 with efficient utilization of hydroxylamine. Bioresour Technol 232:285–296

    CAS  Google Scholar 

  • Pascault N, Cecillon L, Mathieu O, Henault C, Sarr A, Leveque J, Farcy P, Ranjard L, Maron PA (2010) In situ dynamics of microbial communities during decomposition of wheat, rape, and alfalfa residues. Microb Ecol 60:816–828

    Google Scholar 

  • Pfannerstill M, Kuhling I, Hugenschmidt C, Trepel M, Fohrer N (2016) Reactive ditches: a simple approach to implement denitrifying wood chip bioreactors to reduce nitrate exports into aquatic ecosystems? Environ Earth Sci 75:1063

    Google Scholar 

  • Robertson WD, Merkley LC (2009) In-stream bioreactor for agricultural nitrate treatment. J Environ Qual 38:230–237

    CAS  Google Scholar 

  • Rosenberg E (2014) The family Chitinophagaceae. In: Rosenberg E, Long EFD, Lory S, Stackebrandt E, Thompson F (eds) The prokaryotes: other major lineages of bacteria and the archaea. Springer Berlin Heidelberg, pp 493–495

  • Saliling WJB, Westerman PW, Losordo TM (2007) Wood chips and wheat straw as alternative biofilter media for denitrification reactors treating aquaculture and other wastewaters with high nitrate concentrations. Aquac Eng 37:222–233

    Google Scholar 

  • Schipper LA, McGill A (2008) Nitrogen transformation in a denitrification layer irrigated with dairy factory effluent. Water Res 42:2457–2464

    CAS  Google Scholar 

  • Schipper LA, Robertson WD, Gold AJ, Jaynes DB, Cameron SC (2010) Denitrifying bioreactors-an approach for reducing nitrate loads to receiving waters. Ecol Eng 36:1532–1543

    Google Scholar 

  • Shapleigh JP (2006) The denitrifying prokaryotes. In: Dworkin M, Falkow S, Rosenberg E, Schleifer KH, Stackebrandt E (eds) The prokaryotes volume 2: ecophysiology and biochemistry. Springer, New York, pp 769–792

    Google Scholar 

  • She P, Bo S, Xing XH, van Loosdrecht M, Liu Z (2006) Electrolytic stimulation of bacteria Enterobacter dissolvens by a direct current. Biochem Eng J 28:23–29

    CAS  Google Scholar 

  • Shen ZQ, Zhou YX, Hu J, Wang JL (2013) Denitrification performance and microbial diversity in a packed-bed bioreactor using biodegradable polymer as carbon source and biofilm support. J Hazard Mater 250:431–438

    Google Scholar 

  • Shrestha PM, Noll M, Liesack W (2007) Phylogenetic identity, growth-response time and rRNA operon copy number of soil bacteria indicate different stages of community succession. Environ Microbiol 9:2464–2474

    CAS  Google Scholar 

  • Shrestha M, Shrestha PM, Conrad R (2011) Bacterial and archaeal communities involved in the in situ degradation of C-13-labelled straw in the rice rhizosphere. Environ Microbiol Rep 3:587–596

    CAS  Google Scholar 

  • Srinandan CS, D’Souza G, Srivastava N, Nayak BB, Nerurkar AS (2012) Carbon sources influence the nitrate removal activity, community structure and biofilm architecture. Bioresour Technol 117:292–299

    CAS  Google Scholar 

  • Tilman D, Fargione J, Wolff B, D’Antonio C, Dobson A, Howarth R, Schindler D, Schlesinger WH, Simberloff D, Swackhamer D (2001) Forecasting agriculturally driven global environmental change. Science 292:281–284

    CAS  Google Scholar 

  • Trois C, Coulon F, de Combret CP, Martins JMF, Oxarango L (2010) Effect of pine bark and compost on the biological denitrification process of non-hazardous landfill leachate: focus on the microbiology. J Hazard Mater 181:1163–1169

    CAS  Google Scholar 

  • Tyler HL, Moore MT, Locke MA (2012) Influence of three aquatic macrophytes on mitigation of nitrogen species from agricultural runoff. Water Air Soil Pollut 223:3227–3236

    CAS  Google Scholar 

  • Verbaendert I, Boon N, De Vos P, Heylen K (2011) Denitrification is a common feature among members of the genus Bacillus. Syst Appl Microbiol 34:385–391

    CAS  Google Scholar 

  • Wan WJ, He DL, Xue ZJ (2017) Removal of nitrogen and phosphorus by heterotrophic nitrification-aerobic denitrification of a denitrifying phosphorus-accumulating bacterium Enterobacter cloacae HW-15. Ecol Eng 99:199–208

    Google Scholar 

  • Wang XM, Xing LJ, Qiu TL, Han ML (2013a) Simultaneous removal of nitrate and pentachlorophenol from simulated groundwater using a biodenitrification reactor packed with corncob. Environ Sci Pollut R 20:2236–2243

    CAS  Google Scholar 

  • Wang P, Yuan YZ, Li Q, Yang JZ, Zheng YL, He MQ, Geng H, Xiong L, Liu DL (2013b) Isolation and immobilization of new aerobic denitrifying bacteria. Int Biodeterior Biodegradation 76:12–17

    CAS  Google Scholar 

  • Warneke S, Schipper LA, Bruesewitz DA, Baisden WT (2011) A comparison of different approaches for measuring denitrification rates in a nitrate removing bioreactor. Water Res 45:4141–4151

    CAS  Google Scholar 

  • Wei D, Li MT, Wang XD, Han F, Li LS, Guo J, Ai LJ, Fang LL, Liu L, Du B, Wei Q (2016) Extracellular polymeric substances for Zn (II) binding during its sorption process onto aerobic granular sludge. J Hazard Mater 301:407–415

    CAS  Google Scholar 

  • Wu YZ, Li Y, Fu XQ, Liu XL, Shen JL, Wang Y, Wu JS (2016) Three-dimensional spatial variability in soil microorganisms of nitrification and denitrification at a row-transect scale in a tea field. Soil Biol Biochem 103:452–463

    CAS  Google Scholar 

  • Xu HJ, Wang XH, Li H, Yao HY, Su JQ, Zhu YG (2014) Biochar impacts soil microbial community composition and nitrogen cycling in an acidic soil planted with rape. Environ Sci Technol 48:9391–9399

    CAS  Google Scholar 

  • Yi XH, Wan JQ, Ma YW, Wang Y (2016) Characteristics and dominant microbial community structure of granular sludge under the simultaneous denitrification and methanogenesis process. Biochem Eng J 107:66–74

    CAS  Google Scholar 

  • Yu Z, Yang J, Liu LM (2014) Denitrifier community in the oxygen minimum zone of a subtropical deep reservoir. PLoS One 9

  • Zhang CC, Yin Q, Wen Y, Guo WR, Liu C, Zhou Q (2016) Enhanced nitrate removal in self-supplying carbon source constructed wetlands treating secondary effluent: the roles of plants and plant fermentation broth. Ecol Eng 91:310–316

    Google Scholar 

  • Zhou B, Wang Y, Feng Y, Lin X (2016) The application of rapidly composted manure decreases paddy CH4 emission by adversely influencing methanogenic archaeal community: a greenhouse study. J Soils Sediments 16:1889–1900

    CAS  Google Scholar 

Download references

Funding

This work was funded by the Major Science and Technology Project of Water Pollution Control and Management in China (2017ZX07202004), The National Key Research and Development Program of China (2016YFD0801101), National Natural Science Foundation of China (41701303), China Postdoctoral Science Foundation (2017M621671), and Jiangsu Planned Projects for Postdoctoral Research Funds (1701017B).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Linzhang Yang.

Ethics declarations

Conflict of interest

The authors declare that they have no conflict of interest.

Additional information

Responsible editor: Diane Purchase

Publisher’s note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Electronic supplementary material

ESM 1

(DOCX 141 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Zhou, B., Duan, J., Xue, L. et al. Effect of plant-based carbon source supplements on denitrification of synthetic wastewater: focus on the microbiology. Environ Sci Pollut Res 26, 24683–24694 (2019). https://doi.org/10.1007/s11356-019-05454-x

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11356-019-05454-x

Keywords

Navigation