Abstract
R-phycoerythrin is a fluorescent red protein-pigment complex present in red algae. It belongs to the light-harvesting phycobiliprotein family with phycocyanin and allophycocyanin, which together make up the phycobilisome. The protein is most commonly used for its fluorescence properties in biochemistry. To determine the highest R-phycoerythrin yielding red algal species, a reliable quantification method is required. Calculating R-phycoerythrin yield from the crude extract’s absorption values has been the quickest and most widely used technique but at the same time, often misleading approach when impurities are present. Small phycoerythrin, which is often present in red algal suspensions, alters the absorption curve and leads to erroneous results. In the given study, we utilized an HPLC-SEC method with fluorescence and photo-diode array detectors, which is capable of separating the phycobiliproteins from interfering compounds. Also, the technique can detect and quantitate R-phycoerythrin yields reliably. A total of nine red algal species from Estonian and Japanese waters were tested, and small phycoerythrin was detected from most of the samples. For two of the tested species, the spectrophotometric quantification methods overestimated the yields by more than 200%.
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References
Básaca-Loya GA, Valdez MA, Enríquez-Guevara EA, Gutiérrez-Millán LE, Burboa MG (2009) Extraction and purification of B-phycoerythrin from the red microalga Rhodosorus marinus. Cienc Mar 35:359–368
Beer S, Eshel A (1985) Determining phycoerythrin and phycocyanin concentrations in aqueous crude extracts of red algae. Aust J Mar Freshw Res 36:785–792
Bennett A, Bogorad L (1973) Complementary chromatic adaptation in a filamentous blue-green alga. J Cell Biol 58:419–435
Bermejo Román R, Alvárez-Pez JM, Acién Fernández FG, Molina Grima E (2002) Recovery of pure B-phycoerythrin from the microalga Porphyridium cruentum. J Biotechnol 93:73–85
Dumay J, Clément N, Morançais M, Fleurence J (2013) Optimization of hydrolysis conditions of Palmaria palmata to enhance R-phycoerythrin extraction. Bioresour Technol 131:21–27
Fan-jie Z, Zi-xuan Y, Li-jin J (1984) Isolation and characterization of R-phycocyanin from Polysiphonia urceolata. Hydrobiologia 116–117:594–596
Francavilla M, Franchi M, Monteleone M, Caroppo C (2013) The red seaweed Gracilaria gracilis as a multi products source. Mar Drugs 11:3754
Gantt E (1990) Pigmentation and photoacclimation. In: Cole KM, Sheath RG (eds) Biology of the red algae. Cambridge University Press, Cambridge, pp 203–219
Gantt E, Grabowski B, Cunningham FX (2003) Antenna systems of red algae: phycobilisomes with photosystem ll and chlorophyll complexes with photosystem I. In: Green BR, Parson WW (eds) Light-harvesting antennas in photosynthesis. Springer, Dordrecht, pp 307–322
Honsell E, Kosovel V, Talarico L (1984) Phycobiliprotein distribution in Rhodophyta: studies and interpretations on the basis of their absorption spectra. Bot Mar 27:1–16
Ismail M, Osman MEH (2017) Seasonal fluctuation of photosynthetic pigments of most common red seaweeds species collected from Abu Qir, Alexandria, Egypt. Rev Biol Mar Oceanogr 51:515–525
Joubert Y, Fleurence J (2008) Simultaneous extraction of proteins and DNA by an enzymatic treatment of the cell wall of Palmaria palmata (Rhodophyta). J Appl Phycol 20:55–61
Kaldmäe M, Sahin C, Saluri M, Marklund EG, Landreh M (2019) A strategy for the identification of protein architectures directly from ion mobility mass spectrometry data reveals stabilizing subunit interactions in light harvesting complexes. Protein Sci 28:1024–1030
Kawsar SMA, Fujii Y, Matsumoto R, Yasumitsu H, Ozeki Y (2011) Protein R-phycoerythrin from marine red alga Amphiroa anceps: extraction, purification and characterization. Phytol Balcan 17:347–354
Kursar TA, van der Meer J, Alberte RS (1983) Light-harvesting system of the red alga Gracilaria tikvahiae: II. Phycobilisome characteristics of pigment mutants. Plant Physiol 73:361–369
Le Guillard C, Dumay J, Donnay-Moreno C, Bruzac S, Ragon J-Y, Fleurence J, Bergé J-P (2015) Ultrasound-assisted extraction of R-phycoerythrin from Grateloupia turuturu with and without enzyme addition. Algal Res 12:522–528
Lüder UH, Knoetzel J, Wiencke C (2001) Acclimation of photosynthesis and pigments to seasonally changing light conditions in the endemic Antarctic red macroalga Palmaria decipiens. Polar Biol 24:598–603
MacColl R, Eisele LE, Williams EC, Bowser SS (1996) The discovery of a novel R-phycoerythrin from an antarctic red alga. J Biol Chem 271:17157–17160
MacColl R, Eisele LE, Malak H, Endres RL, Williams EC, Bowser SS (1999) Studies on R-phycoerythrins from two Antarctic marine red algae and a mesophilic red alga. Polar Biol 22:384–388
Malairaj S, Muthu S, Gopal VB, Perumal P, Ramasamy R (2016) Qualitative and quantitative determination of R-phycoerythrin from Halymenia floresia (Clemente) C. Agardh by polyacrylamide gel using electrophoretic elution technique. J Chromatogr A 1454:120–126
Marcati A, Ursu AV, Laroche C, Soanen N, Marchal L, Jubeau S, Djelveh G, Michaud P (2014) Extraction and fractionation of polysaccharides and B-phycoerythrin from the microalga Porphyridium cruentum by membrane technology. Algal Res 5:258–263
Munier M, Dumay J, Morançais M, Jaouen P, Fleurence J (2013) Variation in the biochemical composition of the edible seaweed Grateloupia turuturu Yamada harvested from two sampling sites on the Brittany coast (France): the influence of storage method on the extraction of the seaweed pigment R-phycoerythrin. J Chem 2013:1–8
Munier M, Jubeau S, Wijaya A, Morançais M, Dumay J, Marchal L, Jaouen P, Fleurence J (2014) Physicochemical factors affecting the stability of two pigments: R-phycoerythrin of Grateloupia turuturu and B-phycoerythrin of Porphyridium cruentum. Food Chem 150:400–407
Munier M, Morançais M, Dumay J, Jaouen P, Fleurence J (2015) One-step purification of R-phycoerythrin from the red edible seaweed Grateloupia turuturu. J Chromatogr B 992:23–29
Nguyen HPT, Morançais M, Fleurence J, Dumay J (2017) Mastocarpus stellatus as a source of R-phycoerythrin: optimization of enzyme assisted extraction using response surface methodology. J Appl Phycol 29:1563–1570
Niu J-F, Chen Z-F, Wang G-C, Zhou B-C (2010) Purification of phycoerythrin from Porphyra yezoensis Ueda (Bangiales, Rhodophyta) using expanded bed absorption. J Appl Phycol 22:25–31
Niu J-F, Wang G-C, Lin X-z, Zhou B-C (2007a) Large-scale recovery of C-phycocyanin from Spirulina platensis using expanded bed adsorption chromatography. J Chromatogr B 850:267–276
Niu J-F, Wang G-C, Tseng C-K (2006) Method for large-scale isolation and purification of R-phycoerythrin from red alga Polysiphonia urceolata Grev. Protein Expr Purif 49:23–31
Niu J-F, Wang G-C, Zhou B-C, Lin X-Z, Chen C-S (2007b) Purification of R-phycoerythrin from Porphyra haitanensis (Bangiales, Rhodophyta) using expanded-bed absorption. J Phycol 43:1339–1347
Niu J, Xu M, Wang G, Zhang K, Peng G (2013) Comprehensive extraction of agar and R-phycoerythrin from Gracilaria lemaneiformis (Bangiales, Rhodophyta). Indian J Geomarine Sci 42:21–28
O’Carra P (1965) Purification and N-terminal analyses of algal biliproteins. Biochem J 94:171–174
Pereira DC, Trigueiro TG, Colepicolo P, Marinho-Soriano E (2012) Seasonal changes in the pigment composition of natural population of Gracilaria domingensis (Gracilariales, Rhodophyta). Rev Bras Farmacogn 22:874–880
Rennis DS, Ford TW (1992) A survey of antigenic differences between phycoerythrins of various red algal (Rhodophyta) species. Phycologia 31:192–204
Rosenberg G (1981) Ecological growth strategies in the seaweeds Gracilaria foliifera (Rhodophyceae) and Ulva sp. (Chlorophyceae). Yale University,
Rosenberg G, Ramus J (1982) Ecological growth strategies in the seaweeds Gracilaria foliifera (Rhodophyceae) and Ulva sp. (Chlorophyceae): photosynthesis and antenna composition. Mar Ecol 8:233–241
Rossano R, Ungaro N, D’Ambrosio A, Liuzzi GM, Riccio P (2003) Extracting and purifying R-phycoerythrin from Mediterranean red algae Corallina elongata Ellis & Solander. J Biotechnol 101:289–293
Saluri M, Kaldmäe M, Tuvikene R (2019) Extraction and quantification of phycobiliproteins from the red alga Furcellaria lumbricalis. Algal Res 37:115–123
Sampath-Wiley P, Neefus C (2007) An improved method for estimating R-phycoerythrin and R-phycocyanin contents from crude aqueous extracts of Porphyra (Bangiales, Rhodophyta). J Appl Phycol 19:123–129
Sfriso AA, Gallo M, Baldi F (2018) Phycoerythrin productivity and diversity from five red macroalgae. J Appl Phycol:2523–2531
Stadnichuk IN, Khokhlachev AV, Tikhonova YV (1993) Polypeptide γ-subunits of R-phycoerythrin. J Photochem Photobiol B 18:169–175
Stadnichuk IN, Tropin IV (2017) Phycobiliproteins: structure, functions and biotechnological applications. Appl Biochem Microbiol 53:1–10
Sudhakar MP (2014) Extraction, purification and application study of R-phycoerythrin from Gracilaria corticata (J.Agardh) J. Agardh var. corticata. Indian J Nat Prod Resour 5:371–374
Talarico L, Rascio N, Dalla-Vecchia F, Maranzana G (1998) Some observations on phycobilisomes of Pterocladiella capillacea (Gelidiaceae, Rhodophyta). Plant Biosyst 132:87–96
Vernon T, Glazer AN, Stryer L (1982) Fluorescent phycobiliprotein conjugates for analyses of cells and molecules. J Cell Biol 93:981–986
Wang G, Zhou B, Tseng CK (1996) Purification of C-phycocyanin from Spirulina platensis and R-phycoerythrin from Polysiphonia urceolata and determination of their molar extinction coefficient. Mar Sci 1:52–55
Wang L, Qu Y, Fu X, Zhao M, Wang S, Sun L (2014) Isolation, purification and properties of an R-phycocyanin from the phycobilisomes of a marine red macroalga Polysiphonia urceolata. PLoS One 9:e87833
Zhongzheng P, Baicheng Z, Chengkui Z (1986) Comparative studies on spectral properties of R-phycoerythrin from the red seaweeds from Qingdao. Chin J Oceanol Limnol 4:353–359
Zubia M, Freile-Pelegrín Y, Robledo D (2014) Photosynthesis, pigment composition and antioxidant defences in the red alga Gracilariopsis tenuifrons (Gracilariales, Rhodophyta) under environmental stress. J Appl Phycol 26:2001–2010
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Financial support was provided by the Estonian Research Council grant PUT1406.
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Saluri, M., Kaldmäe, M. & Tuvikene, R. Reliable quantification of R-phycoerythrin from red algal crude extracts. J Appl Phycol 32, 1421–1428 (2020). https://doi.org/10.1007/s10811-019-01968-6
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DOI: https://doi.org/10.1007/s10811-019-01968-6