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Development and application of a low-cost rapid assessment system for coastal benthic habitats

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Information on community structure and spatial distribution of benthic habitats are important in marine conservation and management. Coral areas, often monitored by trained scuba divers, are of importance for the ecosystem goods and services they provide. The data gathered may, however, be limited due to cost and time constraints. These restrictions and the continuing decline in coral reef health contribute to the need to develop rapid methods to efficiently document the distribution and status of coral reefs. A Rapid Assessment Instrument for Coastal Benthic Habitats (ARAICoBeH) System was developed to enable large-scale but low-cost coastal benthic habitat characterization and mapping without compromising accuracy. Inquiries on community structure and status in coral-dominated areas are also possible with the data collected using the method. The instrument, as well as the data processing and mapping algorithm are described in detail in this paper. A comparative study was conducted between ARAICoBeH and the frequently used underwater photo transect method. Variables compared were percent coral cover, functional group diversity, community structure as well as time and monetary requirements. There were no significant differences in estimates of percent coral cover and diversity of benthic functional groups for majority of sites while estimates of community structure were very similar. ARAICoBeH is cheaper and requires less time to gather the same amount of data as that of the photo transect method. The spatial distribution of coastal benthic habitats and community structure of coral-dominated areas in El Nido, Palawan, Philippines, are included to illustrate the application of the method.

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References

  • Andréfouët, S., & Riegl, B. (2004). Remote sensing: A key tool for interdisciplinary assessment of coral reef processes. Coral Reefs, 23(1), 1–4.

    Google Scholar 

  • Andréfouët, S., Muller-Karger, F. E., Robinson, J. A., Kranenburg, C. J., Torres-Pulliza, D., Spraggins, S. A., & Murch, B. (2006, June). Global assessment of modern coral reef extent and diversity for regional science and management applications: A view from space. In Proceedings of the 10th international coral reef symposium (Vol. 2, pp. 1732–1745). Okinawa: Japan.

    Google Scholar 

  • Aswani, S., & Lauer, M. (2006). Incorporating fishermen’s local knowledge and behavior into geographical information systems (GIS) for designing marine protected areas in Oceania. Human Organization, 65(1), 81–102.

    Google Scholar 

  • Baker, A. C., Glynn, P. W., & Riegl, B. (2008). Climate change and coral reef bleaching: An ecological assessment of long-term impacts, recovery trends and future outlook. Estuarine, Coastal and Shelf Science, 80(4), 435–471.

    Google Scholar 

  • Bates, C. R., Moore, C. G., Malthus, T, Harries, D. B., Austin, W., Mair, J. M., & Karpouzli, E. (2004). Broad scale mapping of sublittoral habitats in the sound of Barra, Scotland. Scottish Natural Heritage Report: 005, 147 pp.

  • Beaman, R. J., & Harris, P. T. (2005). Bioregionalization of the George V shelf, East Antarctica. Continental Shelf Research, 25(14), 1657–1691.

    Google Scholar 

  • Beenaerts, N., & Berghe, E. V. (2005). Comparative study of three transect methods to assess coral cover, richness and diversity. Western Indian Ocean Journal of Marine Science, 4(1), 29–38.

    Google Scholar 

  • Beenaerts, N., Berghe, E. V. (2007). Comparative Study of Three Transect Methods to Assess Coral Cover, Richness and Diversity. Western Indian Ocean Journal of Marine Science 4(1)

  • Brown, E. K., Cox, E., Jokiel, P. L., Rodgers, S. K., Smith, W. R., Tissot, B. N., et al. (2004). Development of benthic sampling methods for the coral reef assessment and monitoring program (CRAMP) in Hawai’i. Pacific Science, 58(2), 145–158.

    Google Scholar 

  • Bruno, J. F., & Selig, E. R. (2007). Regional decline of coral cover in the indo-Pacific: Timing, extent, and subregional comparisons. PLoS One, 2(8), e711.

    Google Scholar 

  • Burke, L., Selig, E., & Spalding, M. (2011). Reefs at risk revisited. Washington, DC: World Resource Institute.

    Google Scholar 

  • Capturing Coral Reef and Related Ecosystem Services. (2014). CCRES annual report 2014. Retrieved from http://ccres.net/images/uploads/publications/78/ccres_annual_report_2015_for_web.pdf.

  • Cesar, H. (2000). Impacts of the 1998 coral bleaching event on tourism in El Nido, Philippines. RI, USA: Coastal Resources Center, University of Rhode Island.

  • Clarke K. R. (1993) Non-parametric multivariate analyses of changes in community structure. Austral Ecology 18(1):117–143

    Google Scholar 

  • Clarke, K. R., & Warwick, R. M. (1994). An approach to statistical analysis and interpretation. Change in marine communities, 2.

  • Cola, R., de la Calzada, R. J., Palma, J., & Tongson, E. (Eds.). (2005). El Nido: Working together for environmental enforcement. Quezon City: WWF-Philippines.

    Google Scholar 

  • Cole, R., McComb, P., & Sait, J. (2001). Use of drop video to map habitats in a high energy shallow reef environment. In Video sensing of the size and abundance of target and non-target fauna in Australian fisheries-a national workshop (p. 74).

  • Connell, J. H. (1978). Diversity in tropical rain forests and coral reefs. Science, 199(4335), 1302–1310.

    CAS  Google Scholar 

  • Dethier, M. N., Graham, E. S., Cohen, S., & Tear, L. M. (1993). Visual versus random-point percent cover estimations: ‘Objective’ is not always better. Marine Ecology Progress Series, 96, 9.

    Google Scholar 

  • Dunbabin, M., Roberts, J., Usher, K., Winstanley, G., & Corke, P. (2005). A hybrid AUV design for shallow water reef navigation. In Proceedings of the international conference on robotics and Autiomation. (pp. 2105–2110). Barcelona.

  • English, S., Wilkinson, C., & Baker, V. (1997). Survey manual for tropical marine resources (2nd ed.). Townsville: Australian Institute of Marine Science.

    Google Scholar 

  • Fabricius, K. E. (2005). Effects of terrestrial runoff on the ecology of corals and coral reefs: Review and synthesis. Marine Pollution Bulletin, 50(2), 125–146.

    CAS  Google Scholar 

  • Gardner, T. A., Cote, I. M., Gill, J. A., Grant, A., & Watkinson, A. R. (2005). Hurricanes and Caribbean coral reefs: Impacts, recovery patterns, and role in long-term decline. Ecology, 86(1), 174–184.

    Google Scholar 

  • Gilbert, A., Andréfouët, S., Yan, L., & Remoissenet, G. (2006). The giant clam Tridacna maxima communities of three French Polynesia islands: Comparison of their population sizes and structures at early stages of their exploitation. ICES Journal of Marine Science, 63(9), 1573–1589.

    Google Scholar 

  • Green, E. P., Mumby, P. J., Edwards, A. J., & Clark, C. D. (1996). A review of remote sensing for the assessment and management of tropical coastal resources. Coastal Management, 24(1), 1–40.

    Google Scholar 

  • Grizzle, R. E., Brodeur, M. A., Abeels, H. A., & Greene, J. K. (2008). Bottom habitat mapping using towed underwater videography: Subtidal oyster reefs as an example of application. Journal of Coastal Research, 241, 103–109.

    Google Scholar 

  • Hill, J., & Wilkinson, C. (2004). Methods for ecological monitoring of coral reefs (Vol. 117). Townsville: Australian Institute of Marine Science.

    Google Scholar 

  • Hodgson, G., & Dixon, J. A. (2000). In H. S. J. Cesar (Ed.), Collected Essays on the Economics of Coral Reefs El Nido revisited: Ecotourism, logging and fisheries (pp. 55–68). Kalmar: CORDIO.

    Google Scholar 

  • Hoegh-Guldberg, O., Mumby, P. J., Hooten, A. J., Steneck, R. S., Greenfield, P., Gomez, E., Harvell, C. D., Sale, P. F., Edwards, A. J., Caldeira, K., Knowlton, N., Eakin, C. M., Iglesias-Prieto, R., Muthiga, N., Bradbury, R. H., Dubi, A., & Hatziolos, M. E. (2007). Coral reefs under rapid climate change and ocean acidification. Science, 318(5857), 1737–1742.

    CAS  Google Scholar 

  • Horikoshi, M. (1988). So-called “embayment degree” recognized in the coastal regional ecosystem in Ryukyu and Palau. Galaxea, 7, 197–210.

    Google Scholar 

  • Houk, P., & Van Woesik, R. (2006). Coral reef benthic video surveys facilitate long-term monitoring in the Commonwealth of the Northern Mariana Islands: Toward an optimal sampling strategy. Pacific Science, 60(2), 177–189.

    Google Scholar 

  • Jokiel, P. L., Rodgers, K. S., Brown, E. K., Kenyon, J. C., Aeby, G., Smith, W. R., & Farrell, F. (2015). Comparison of methods used to estimate coral cover in the Hawaiian islands. PeerJ, 3, e954.

    Google Scholar 

  • Jones, L. A., Hiscock, K., & Connor, D. W. (2000). Marine habitat reviews. A summary of ecological requirements and sensitivity characteristics for the conservation and management of marine SACs. Joint Nature Conservation Committee, Peterborough, UK: JNCC, 178.

  • Knowlton, N. (2001). The future of coral reefs. Proceedings of the National Academy of Sciences, 98(10), 5419–5425. https://doi.org/10.1073/pnas.091092998.

    Article  CAS  Google Scholar 

  • Kohler, K. E., & Gill, S. M. (2006). Coral point count with excel extensions (CPCe): A visual basic program for the determination of coral and substrate coverage using random point count methodology. Computers & Geosciences, 32(9), 1259–1269.

    Google Scholar 

  • Lam, K., Shin, P. K., Bradbeer, R., Randall, D., Ku, K. K., Hodgson, P., & Cheung, S. G. (2006). A comparison of video and point intercept transect methods for monitoring subtropical coral communities. Journal of Experimental Marine Biology and Ecology, 333(1), 115–128.

    Google Scholar 

  • Leujak, W., & Ormond, R. F. G. (2007). Comparative accuracy and efficiency of six coral community survey methods. Journal of Experimental Marine Biology and Ecology, 351(1), 168–187.

    Google Scholar 

  • Licuanan, W. Y., & Aliño, P. M. (2014). A proposed framework for a national coral reef assessment program. Philippine Science Letters, 7(1), 201–206.

    Google Scholar 

  • Licuanan, W. Y., & Gomez, E. D. (1988). Coral reefs of the northwestern Philippines: A physiognomic-structural approach. In Proceedings of the 6th international coral reef symposium (Vol. 3, pp. 275–280). Townsville.

  • Licuanan, A. M., Reyes, M. Z., Luzon, K. S., Chan, M. A. A., & Licuanan, W. Y. (2017). Initial findings of the nationwide assessment of Philippine Coral Reefs. Philippine Journal of Science, 146(2), 177–185.

    Google Scholar 

  • Lirman, D., Gracias, N. R., Gintert, B. E., Gleason, A. C. R., Reid, R. P., Negahdaripour, S., & Kramer, P. (2007). Development and application of a video-mosaic survey technology to document the status of coral reef communities. Environmental Monitoring and Assessment, 125(1–3), 59–73. https://doi.org/10.1007/s10661-006-9239-0.

    Article  Google Scholar 

  • McClanahan, T. R. (2002). The near future of coral reefs. Environmental Conservation, 29(4), 460–483.

    CAS  Google Scholar 

  • Mitchell, A., & Coggan, R. (2007). 19 remote video techniques. In R. Coggan, J. Populus, J. White, K. Sheeran, F. Fitzpatrick, & S. Piel (Eds.), Review of standards and protocols for seabed habitat mapping (pp. 179–203). MESH Mapping European Seabed Habitats, INTERRG European Program.

  • Moberg, F., & Folke, C. (1999). Ecological goods and services of coral reef ecosystems. Ecological Economics, 29(2), 215–233.

    Google Scholar 

  • Mumby, P. J., Green, E. P., Edwards, A. J., & Clark, C. D. (1997). Coral reef habitat mapping: How much detail can remote sensing provide? Marine Biology, 130(2), 193–202.

    Google Scholar 

  • Murdoch, T. J., & Aronson, R. B. (1999). Scale-dependent spatial variability of coral assemblages along the Florida reef tract. Coral Reefs, 18(4), 341–351.

    Google Scholar 

  • Ninio, R., Delean, S., Osborne, K., & Sweatman, H. (2003). Estimating cover of benthic organisms from underwater video images: Variability associated with multiple observers. Marine Ecology Progress Series, 265, 107–116. https://doi.org/10.3354/meps265107.

    Article  Google Scholar 

  • Pacunski, R. E., Palsson, W. A., Greene, H. G., & Gunderson, D. (2008). Conducting visual surveys with a small ROV in shallow water. In Marine habitat mapping technology for Alaska (pp. 109–128).

    Google Scholar 

  • Pandolfi, J. M., Bradbury, R. H., Sala, E., Hughes, T. P., Bjorndal, K. A., Cooke, R. G., et al. (2003). Global trajectories of the Long-term decline of coral reef ecosystems. Science, 301(5635), 955–958. https://doi.org/10.1126/science.1085706.

    Article  CAS  Google Scholar 

  • Pandolfi, J. M., Connolly, S. R., Marshall, D. J., & Cohen, A. L. (2011). Projecting coral reef futures under global warming and ocean acidification. Science, 333(6041), 418–422. https://doi.org/10.1126/science.1204794.

    Article  CAS  Google Scholar 

  • Quibilan, M., & Aliño, P. (2006). Coral community structure of western Philippine reefs I: Spatial patterns. In Proceedings of the 10th international coral reef symposium (pp. 341–350). Okinawa, Japan.

  • R Core Team. (2015). R: A language and environment for statistical computing. Vienna: R Foundation for Statistical Computing Retrieved from http://www.R-project.org/.

    Google Scholar 

  • Roberts, J. M., Brown, C. J., Long, D., & Bates, C. R. (2005). Acoustic mapping using a multibeam echosounder reveals cold-water coral reefs and surrounding habitats. Coral Reefs, 24(4), 654–669.

    Google Scholar 

  • Schneider, D. C., Gagnon, J. M., & Gilkinson, K. D. (1987). Patchiness of epibenthic megafauna on the outer Grand banks of Newfoundland. Marine Ecology Progress Series, 39, 1–13.

    Google Scholar 

  • Scopélitis, J., Andréfouët, S., Phinn, S., Arroyo, L., Dalleau, M., Cros, A., & Chabanet, P. (2010). The next step in shallow coral reef monitoring: Combining remote sensing and in situ approaches. Marine Pollution Bulletin, 60(11), 1956–1968.

    Google Scholar 

  • Service, M., & Golding, N. (2001). Procedural guideline no 3-14: In situ survey of sublittoral epibiota using towed sledge video and still photography. In J. Davies, J. Baxter, M. Bradley, D. Connor, J. Khan, E. Murray, W. Sanderson, C. Turnbull, & M. Vincent (Eds.), Natura 2000 marine monitoring handbook. UK marine SACs project (pp. 331–337). Peterborough: UK.

    Google Scholar 

  • Szmant, A. M. (2002). Nutrient enrichment on coral reefs: Is it a major cause of coral reef decline? Estuaries, 25(4), 743–766. https://doi.org/10.1007/BF02804903.

    Article  CAS  Google Scholar 

  • Tomascik, T., & Sander, F. (1985). Effects of eutrophication on reef-building corals. Marine Biology, 87(2), 143–155. https://doi.org/10.1007/BF00539422.

    Article  Google Scholar 

  • Tortell, P. (1992). Coastal zone sensitivity mapping and its role in marine environmental management. Marine Pollution Bulletin, 25(1–4), 88–93.

    Google Scholar 

  • Turak, E., & DeVantier, L. (2010). Coral biodiversity, marine tourism and conservation priorities in. El Nido, Palawan. https://doi.org/10.13140/RG.2.1.4390.9282.

  • UNEP-WCMC, WorldFish Centre, WRI, TNC. (2010). Global distribution of warmwater coral reefs, compiled from multiple sources (listed in "Coral_Source.mdb"), and including IMaRS-USF and IRD (2005), IMaRS-USF (2005) and Spalding et al. (2001). Cambridge (UK): UNEP World Conservation Monitoring Centre. URL: data.unep-wcmc.org/datasets/13

  • Van Woesik, R., Gilner, J., & Hooten, A. (2009). In Centre for Marine Studies, Gerhmann Building, The University of Queensland (Ed.), Standard operating procedures for repeated measures of process and state variables of coral reef environments. Coral reef targeted research and capacity building for management program (p. 4072). St Lucia.

  • Walcott, J., Eckert, S., Oxenford, H. A., & Horrocks, J. A. (2014). Use of a towed camera system to investigate benthic habitat use by inter-nesting female hawksbill sea turtles. Endangered Species Research, 24(2), 159–170.

    Google Scholar 

  • Weinberg, S. (1981). A comparison of coral reef survey methods. Bijdragen tot de Dierkunde, 51(2), 199–218.

    Google Scholar 

  • Wilkinson, C. (2008). Status of coral reefs of the world: 2008. Townsville: Global Coral Reef Monitoring Network and Reef and Rainforest Research Centre.

    Google Scholar 

  • Wilkinson, C. R., & Souter, D. N. (Eds.). (2008). Status of Caribbean coral reefs after bleaching and hurricanes in 2005. Global Coral Reef Monitoring Network.

  • Williams, S., & Mahon, I. (2004). Simultaneous localisation and mapping on the great barrier reef. In robotics and automation, 2004. Proceedings. ICRA’04. 2004 IEEE international conference on (Vol. 2, pp. 1771–1776). IEEE. Retrieved from: http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=1308080.

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Acknowledgements

Special thanks to the Philippine Association of Marine Sciences (PAMS) for the opportunity to present this paper.

Funding

This study was funded by the National Assessment of Coral Reef Environments (NACRE) research program of the Department of Science and Technology (DOST) and the Coral Reef Visualization and Assessment (CoRVA) research program of the Department of Natural and Environmental Resources (DENR). Patrick Lawrence P. Cadeliña was also supported by an Outright Research Grant through the University of the Philippines Diliman Office of the Vice-Chancellor for Research and Development (UP-OVCRD) during the revision and fine-tuning of this paper.

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Benjamin, C.S., Cadeliña, P.L.P., Yñiguez, A.T. et al. Development and application of a low-cost rapid assessment system for coastal benthic habitats. Environ Monit Assess 191, 633 (2019). https://doi.org/10.1007/s10661-019-7808-2

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