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Parentage determination in black tiger shrimp (Penaeus monodon) based on microsatellite DNA markers

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Abstract

Parentage determination was a kind of important technology of selective breeding for aquaculture species. In this study, fourteen microsatellite markers were isolated and chosen to estimate the parentage of 100 progeny in ten black tiger shrimp (Penaeus monodon) full-sib families. Simulation analysis indicated that the power of five loci to exclude false parents was 98.9 % and that of six loci over 99.9 % based on allele frequency data. Moreover, the cumulative assignment success rate was 99 % when no parent information was available using six most informative microsatellite markers. Furthermore, the marker panel tested in mixed families, 89.0 % of progeny was correctly assigned to their parental pairs. Based on the microsatellite analysis, it could be quickly and effectively identified different genealogy and sources of P. monodon; moreover, it provided for selective breeding and multiplication release in this species.

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References

  • Botstein D, White RL, Skolnick M, Davis RW (1980) Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet 32:314

    CAS  PubMed  PubMed Central  Google Scholar 

  • Castro J, Pino A, Hermida M, Bouza C, Chavarrı´as D, Merino P, Sa´nchez L, Martı´nez P (2007) A microsatellite marker tool for parentage assessment in gilthead seabream (Sparus aurata). Aquaculture 272:S210–S216

    Article  Google Scholar 

  • Chen X, Cho Y, McCouch SR (2002) Sequence divergence of rice microsatellites in Oryza and other plant species. Mol Genet Genomics 268:331–343

    Article  CAS  PubMed  Google Scholar 

  • Dong S, Kong J, Zhang T, Meng X, Wang R (2006) Parentage determination of Chinese shrimp (Fenneropenaeus chinensis) based on microsatellite DNA markers. Aquaculture 258:283–288

    Article  CAS  Google Scholar 

  • Excoffier L, Laval G, Schneider S (2005) Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evolut Bioinform Online 1:47–50

    CAS  Google Scholar 

  • FBMA (2013) Chinese fisheries year book. China Agriculture Press, Beijing, p 28

    Google Scholar 

  • Feaver WJ, Svejstrup JQ, Henry NL, Kornberg RD (1994) Relationship of CDK-activating kinase and RNA polymerase II CTD kinase TFIIH/TFIIK. Cell 79(6):1103–1109

    Article  CAS  PubMed  Google Scholar 

  • Gheyas AA, Woolliams JA, Taggart JB, Sattar MA, Das TK, McAndrew BJ, Penman DJ (2009) Heritability estimation of silver carp (Hypophthalmichthys molitrix) harvest traits using microsatellite based parentage assignment. Aquaculture 294(3):187–193

    Article  CAS  Google Scholar 

  • Hauser L, Baird M, Hilborn R, Seeb LW, Seeb JE (2011) An empirical comparison of SNPs and microsatellites for parentage and kinship assignment in a wild sockeye salmon (Oncorhynchus nerka) population. Mol Ecol Resour 11(Suppl. 1):150–161

    Article  PubMed  Google Scholar 

  • Herbinger CM, O’Reilly PT, Doyle RW, Wright JM, O’Flynn F (1999) Early growth performance of Atlantic salmon full-sib families reared in single family tanks versus in mixed family tanks. Aquaculture 173(1):105–116

    Article  Google Scholar 

  • Imbert H, Beaulaton L, Rigaud C, Elie P (2007) Evaluation of visible implant elastomer as a method for tagging small European eels. J Fish Biol 71(5):1546–1554

    Article  Google Scholar 

  • Jerry DR, Preston NP, Crocos PJ, Keys S, Meadows JRS, Li Y (2004) Parentage determination of Kuruma shrimp Penaeus (Marsupenaeus) japonicus using microsatellite markers (Bate). Aquaculture 235:237–247

    Article  CAS  Google Scholar 

  • Jones AG, Small CM, Paczolt KA, Ratterman NL (2010) A practical guide to methods of parentage analysis. Mol Ecol Resour 10:6–30

    Article  PubMed  Google Scholar 

  • Kalinowski ST, Taper ML, Marshall TC (2007) Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment. Mol Ecol 16:1099–1106

    Article  PubMed  Google Scholar 

  • Li R, Li Q, Cornette F, Degremont L, Lapegue S (2010) Development of four EST-SSR multiplex PCRs in the Pacific oyster (Crassostrea gigas) and their validation in parentage assignment. Aquaculture 310:234–239

    Article  CAS  Google Scholar 

  • Linnane A, Mercer JP (1998) A comparison of methods for tagging juvenile lobsters (Homarus gammarus L.) reared for stock enhancement. Aquaculture 163:195–202

    Article  Google Scholar 

  • Liu X, Zhao G, Wang Z, Cai M, Ye H, Wang Q (2012) Parentage assignment and parental contribution analysis in large yellow croaker Larimichthy crocea using microsatellite markers. Curr Zool 58:244–249

    Article  CAS  Google Scholar 

  • Ma QQ, Ma HY, Chen JH, Ma CY, Feng NN, Xu ZS, Li J, Jiang W, Qiao ZG, Ma LB (2013) Parentage assignment of the mud crab (Scylla paramamosain) based on microsatellite markers. Biochem Syst Ecol 49:62–68

    Article  CAS  Google Scholar 

  • McDonald GJ, Danzmann RG, Ferguson MM (2004) Relatedness determination in the absence of pedigree information in three cultured stains of rainbow trout (Oncorhynchus mykiss). Aquaculture 233:65–78

    Article  Google Scholar 

  • Sambrook JD, Russell W (2000) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, New York

    Google Scholar 

  • Schuster SC (2008) Next-generation sequencing transforms today’s biology. Nat Methods 5:16–18

    Article  CAS  PubMed  Google Scholar 

  • Sekar M, Alam A, Suresh E, Patchala SR, Kathirvelpandian A, Chaudhari A, Krishna G (2014) Genetic diversity among three Indian populations of black tiger shrimp (Penaeus monodon Fabricious, 1798) using microsatellite DNA markers. Indian J Fish 61(3):45–51

    Google Scholar 

  • Sekino M, Sugaya T, Hara M, Taniguchi N (2004) Relatedness inferred from microsatellite genotypes as a tool for brood stock management of Japanese flounder Paralichthys olivaceus. Aquaculture 233:163–172

    Article  Google Scholar 

  • Tassan JP, Jaquenoud M, Fry AM, Frutiger S, Hughes GJ, Nigg EA (1995) In vitro assembly of a functional human CDK7-cyclin H complex requires MAT1, a novel 36 kDa RING finger protein. EMBO J 14(22):5608

    CAS  PubMed  PubMed Central  Google Scholar 

  • Wuthisuthimethavee S, Lumubol P, Vanavichit A, Tragoonrung S (2003) Development of microsatellite markers in black tiger shrimp (Penaeus monodon Fabricius). Aquaculture 224(14):39–50

    Article  CAS  Google Scholar 

  • Xu J, Feng JY, Peng WZ, Liu X, Feng JX, Xu P (2016) Development and evaluation of a high-throughput single nucleotide polymorphism multiplex assay for assigning pedigrees in common carp. Aquac Res. doi:10.1111/are.13024

    Google Scholar 

  • Yang M, Guo WJ, Liang XF, Tian CX, Lv LY, Zhu KC, Wang HP (2014a) Parentage determination in golden mandarin fish (Siniperca scherzeri) based on microsatellite DNA markers. Aquacult Int. doi:10.1007/s10499-014-9830-2

    Google Scholar 

  • Yang M, Tian CX, Liang XF, Lv LY, Zheng HZ, Yuan YC, Zhao C, Huang W (2014b) Parentage determination of mandarin fish (Siniperca chuatsi) based on microsatellite DNA markers. Biochem Syst Ecol 54:285–291

    Article  CAS  Google Scholar 

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Acknowledgments

This project was funded by the Special Fund for Agro-Scientific Research in the Public Interest (Grant Number: 201403008), the Science and Technology Infrastructure Construction Project of Guangdong Province (Grant Numbers: 2014A030305005 and 2015A030303008), National Infrastructure of Fishery Germplasm Resource Project (Grant Number: 2015DKA30470).

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Authors and Affiliations

  1. Key Laboratory of South China Sea Fishery Resources Exploitation and Utilization, Ministry of Agriculture, South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, 231 Xingang Road West, Haizhu District, Guangzhou, 510300, Guangdong, People’s Republic of China

    Kecheng Zhu, Wenbo Yu, Jianhua Huang, Falin Zhou, Huayang Guo, Nan Zhang, Shigui Jiang & Dianchang Zhang

  2. College of Fisheries and Life Science, Shanghai Ocean University, Shanghai, People’s Republic of China

    Wenbo Yu & Dianchang Zhang

Authors
  1. Kecheng Zhu
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  2. Wenbo Yu
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  3. Jianhua Huang
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  4. Falin Zhou
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  5. Huayang Guo
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  6. Nan Zhang
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  7. Shigui Jiang
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  8. Dianchang Zhang
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Correspondence to Dianchang Zhang.

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Zhu, K., Yu, W., Huang, J. et al. Parentage determination in black tiger shrimp (Penaeus monodon) based on microsatellite DNA markers. Aquacult Int 25, 827–836 (2017). https://doi.org/10.1007/s10499-016-0082-1

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  • DOI: https://doi.org/10.1007/s10499-016-0082-1

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